UBERON:0002114: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236 | ||
|anatomical_img_id=FMA:7206 | |||
| | |||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002114 | |||
|is_a=UBERON:0004921 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=duodenum | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002108 | |part_of=UBERON:0002108 | ||
|preceded_by= | |preceded_by= | ||
|property_value="dubious_for_taxon" NCBITaxon:7955;;IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="proximal intestine" RELATED [BTO:0000365];;"upper intestine" RELATED [BTO:0000365] | |||
|union_of= | |||
|xref=AAO:0010402;;BTO:0000365;;EFO:0000851;;EHDAA:3830;;EHDAA:3937;;EMAPA:17178;;EMAPA:17193;;EMAPA:18661;;EMAPA:18852;;EV:0100073;;FMA:7206;;GAID:284;;galen:Duodenum;;http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg;;MA:0000338;;MAT:0000044;;MESH:A.03.492.411.620.270;;MIAA:0000044;;ncithesaurus:Duodenum;;OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA;;SCTID:181247007;;VHOG:0000052;;XAO:0000236 | |||
}} | }} | ||
Latest revision as of 17:26, 12 September 2014
| Name: | duodenum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum] | ||
| Xrefs: |
| ||
| Synonyms: |
"proximal intestine" RELATED [BTO:0000365] "upper intestine" RELATED [BTO:0000365] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|---|
| part_of: | UBERON:0002108(small intestine) |
Children
| derives from: | FF:0010063 (human duodenum - fetal sample) |
|---|---|
| develops from: | UBERON:0003922 (pancreatic epithelial bud) |
| part of: | UBERON:0004914 (duodenal papilla),FF:0010063 (human duodenum - fetal sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002114 (duodenum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
