Personal tools

UBERON:0002171: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002171
|alt_id=UBERON:FMA_7337-MA_0000428
|name=lower lobe of right lung
|namespace=
|def="The lobe of the right lung that is furtherst from the head." [UBERON:cjm]
|xref=EHDAA2:0001740;;EHDAA:4979;;EMAPA:17986;;FMA:7337;;galen:LowerLobeOfRightLung;;MA:0000428;;ncithesaurus:Lower_Lobe_of_the_Right_Lung;;SCTID:361976007;;VHOG:0000857
|is_a=UBERON:0006518;;UBERON:0008949
|synonym="inferior lobe of right lung" EXACT [FMA:7337];;"lobus inferior pulmonis dextri" EXACT [FMA:7337, FMA:TA];;"lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung];;"right caudal lobe of lung" EXACT [];;"right lower lobe" EXACT [FMA:7337];;"right lower lobe of lung" EXACT [FMA:7337];;"right lung caudal lobe" RELATED [MA:0000428];;"right lung inferior lobe" RELATED [MA:0000428]
|comment=
|comment=
|alt_id=UBERON:FMA_7337-MA_0000428
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The lobe of the right lung that is furtherst from the head." [UBERON:cjm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002171
|is_a=UBERON:0006518 ;;UBERON:0008949
|is_obsolete=
|located_in=
|located_in=
|name=lower lobe of right lung
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002167
|part_of=UBERON:0002167
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="inferior lobe of right lung" EXACT [FMA:7337];;"lobus inferior pulmonis dextri" EXACT [FMA:7337, FMA:TA];;"lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung];;"right caudal lobe of lung" EXACT [];;"right lower lobe" EXACT [FMA:7337];;"right lower lobe of lung" EXACT [FMA:7337];;"right lung caudal lobe" RELATED [MA:0000428];;"right lung inferior lobe" RELATED [MA:0000428]
|union_of=
|xref=EHDAA2:0001740;;EHDAA:4979;;EMAPA:17986;;FMA:7337;;galen:LowerLobeOfRightLung;;MA:0000428;;ncithesaurus:Lower_Lobe_of_the_Right_Lung;;SCTID:361976007;;VHOG:0000857
}}
}}

Latest revision as of 17:27, 12 September 2014

Name:lower lobe of right lung
Namespace:FANTOM
Definition:"The lobe of the right lung that is furtherst from the head." [UBERON:cjm]
Xrefs:
links:

EHDAA2:0001740
EHDAA:4979
EMAPA:17986
FMA:7337
galen:LowerLobeOfRightLung
MA:0000428
ncithesaurus:Lower_Lobe_of_the_Right_Lung
SCTID:361976007

VHOG:0000857
Synonyms: "inferior lobe of right lung" EXACT [FMA:7337]
"lobus inferior pulmonis dextri" EXACT [FMA:7337, FMA:TA]
"lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung]
"right caudal lobe of lung" EXACT []
"right lower lobe" EXACT [FMA:7337]
"right lower lobe of lung" EXACT [FMA:7337]
"right lung caudal lobe" RELATED [MA:0000428]
"right lung inferior lobe" RELATED [MA:0000428]
Alt_id: UBERON:FMA_7337-MA_0000428

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006518(right lung lobe),UBERON:0008949(lower lobe of lung)
part_of:UBERON:0002167(right lung)



Children

is a:FF:10075-102A3 (lung, right lower lobe, adult, donor1)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002171 (lower lobe of right lung), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr6:32148852..32148862,-#_07952db779c8e7ca28027cbda90d6acbp@chr6:32148852..32148862, -
5.42e-195FFCP PHASE1:Hg19::chr2:85893058..85893063,-#_07952db779c8e7ca28027cbda90d6acbp35@SFTPB
5.42e-195FFCP PHASE1:Hg19::chr2:85884987..85884992,-#_07952db779c8e7ca28027cbda90d6acbp@chr2:85884987..85884992, -
5.42e-195FFCP PHASE2:Hg19::chr10:81374723..81374726,-#_07952db779c8e7ca28027cbda90d6acbp@chr10:81374723..81374726, -
5.42e-195FFCP PHASE1:Hg19::chr10:81374723..81374726,-#_07952db779c8e7ca28027cbda90d6acbp@chr10:81374723..81374726, -
5.42e-195FFCP PHASE2:Hg19::chr10:81316085..81316090,-#_07952db779c8e7ca28027cbda90d6acbp@chr10:81316085..81316090, -
5.42e-195FFCP PHASE2:Hg19::chr6:32148852..32148862,-#_07952db779c8e7ca28027cbda90d6acbp@chr6:32148852..32148862, -
5.42e-195FFCP PHASE1:Hg19::chr10:81316085..81316090,-#_07952db779c8e7ca28027cbda90d6acbp@chr10:81316085..81316090, -
5.42e-195FFCP PHASE1:Hg19::chr2:85894675..85894679,+#_07952db779c8e7ca28027cbda90d6acbp@chr2:85894675..85894679, +
5.42e-195FFCP PHASE1:Hg19::chr2:211117597..211117606,+#_07952db779c8e7ca28027cbda90d6acbp@chr2:211117597..211117606, +
5.42e-195FFCP PHASE2:Hg19::chr2:85894638..85894644,+#_07952db779c8e7ca28027cbda90d6acbp@chr2:85894638..85894644, +
5.42e-195FFCP PHASE2:Hg19::chr2:96331830..96331836,+#_07952db779c8e7ca28027cbda90d6acbp1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE1:Hg19::chrX:93772866..93772868,-#_07952db779c8e7ca28027cbda90d6acbp@chrX:93772866..93772868, -
5.42e-195FFCP PHASE2:Hg19::chr2:85893058..85893063,-#_07952db779c8e7ca28027cbda90d6acbp35@SFTPB
5.42e-195FFCP PHASE2:Hg19::chr2:85884987..85884992,-#_07952db779c8e7ca28027cbda90d6acbp@chr2:85884987..85884992, -
5.42e-195FFCP PHASE1:Hg19::chr8:22021803..22021813,-#_07952db779c8e7ca28027cbda90d6acbp@chr8:22021803..22021813, -
5.42e-195FFCP PHASE2:Hg19::chrX:93772866..93772868,-#_07952db779c8e7ca28027cbda90d6acbp@chrX:93772866..93772868, -
5.42e-195FFCP PHASE2:Hg19::chr8:22021803..22021813,-#_07952db779c8e7ca28027cbda90d6acbp@chr8:22021803..22021813, -
5.42e-195FFCP PHASE2:Hg19::chr2:211117597..211117606,+#_07952db779c8e7ca28027cbda90d6acbp@chr2:211117597..211117606, +
5.42e-195FFCP PHASE1:Hg19::chr2:85894638..85894644,+#_07952db779c8e7ca28027cbda90d6acbp@chr2:85894638..85894644, +
5.42e-195FFCP PHASE2:Hg19::chr2:85894675..85894679,+#_07952db779c8e7ca28027cbda90d6acbp@chr2:85894675..85894679, +
5.42e-195FFCP PHASE1:Hg19::chr2:96331830..96331836,+#_07952db779c8e7ca28027cbda90d6acbp1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE2:Hg19::chr10:81316872..81316887,+#_07952db779c8e7ca28027cbda90d6acbp@chr10:81316872..81316887, +
5.42e-195FFCP PHASE1:Hg19::chr10:81316872..81316887,+#_07952db779c8e7ca28027cbda90d6acbp@chr10:81316872..81316887, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316041..81316047,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316041..81316047, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374819..81374828,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374819..81374828, +
9.37e-99FFCP PHASE2:Hg19::chr8:22020085..22020093,+#_f76d27b960b04ef2fc35ced5428df3b4p12@SFTPC
9.37e-99FFCP PHASE1:Hg19::chr2:85889234..85889238,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85889234..85889238, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316041..81316047,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316041..81316047, -
9.37e-99FFCP PHASE2:Hg19::chr8:22021903..22021951,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021903..22021951, -
9.37e-99FFCP PHASE1:Hg19::chr2:85894661..85894668,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85894661..85894668, +
9.37e-99FFCP PHASE2:Hg19::chr2:85894689..85894696,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85894689..85894696, +
9.37e-99FFCP PHASE1:Hg19::chr6:32150708..32150711,-#_f76d27b960b04ef2fc35ced5428df3b4p7@AGER
9.37e-99FFCP PHASE2:Hg19::chr10:81374313..81374327,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374313..81374327, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316910..81316917,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316910..81316917, -
9.37e-99FFCP PHASE1:Hg19::chr2:85886515..85886520,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85886515..85886520, -
9.37e-99FFCP PHASE2:Hg19::chr6:117746871..117746882,-#_f76d27b960b04ef2fc35ced5428df3b4p10@ROS1
9.37e-99FFCP PHASE1:Hg19::chr10:81374313..81374327,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374313..81374327, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316311..81316313,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316311..81316313, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316910..81316917,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316910..81316917, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021526..22021532,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021526..22021532, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316311..81316313,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316311..81316313, -
9.37e-99FFCP PHASE1:Hg19::chr6:32148869..32148878,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr6:32148869..32148878, -
9.37e-99FFCP PHASE2:Hg19::chr6:32150708..32150711,-#_f76d27b960b04ef2fc35ced5428df3b4p7@AGER
9.37e-99FFCP PHASE2:Hg19::chr10:81315944..81315951,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81315944..81315951, -
9.37e-99FFCP PHASE1:Hg19::chr8:22020994..22020998,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22020994..22020998, +
9.37e-99FFCP PHASE2:Hg19::chr10:81374331..81374339,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374331..81374339, +
9.37e-99FFCP PHASE1:Hg19::chr10:81315944..81315951,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81315944..81315951, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374331..81374339,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374331..81374339, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021526..22021532,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021526..22021532, +
9.37e-99FFCP PHASE2:Hg19::chr2:85892915..85892916,-#_f76d27b960b04ef2fc35ced5428df3b4p40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr2:85892885..85892890,-#_f76d27b960b04ef2fc35ced5428df3b4p23@SFTPB
9.37e-99FFCP PHASE2:Hg19::chr10:81316132..81316137,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316132..81316137, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374587..81374595,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374587..81374595, +
9.37e-99FFCP PHASE2:Hg19::chr6:32148869..32148878,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr6:32148869..32148878, -
9.37e-99FFCP PHASE1:Hg19::chr6:32149013..32149018,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr6:32149013..32149018, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316132..81316137,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316132..81316137, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374587..81374595,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374587..81374595, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020196..22020202,+#_f76d27b960b04ef2fc35ced5428df3b4p13@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr10:81316753..81316759,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316753..81316759, -
9.37e-99FFCP PHASE2:Hg19::chr3:127109563..127109564,-#_f76d27b960b04ef2fc35ced5428df3b4p2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE2:Hg19::chr2:85885348..85885355,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85885348..85885355, -
9.37e-99FFCP PHASE1:Hg19::chr2:85894689..85894696,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85894689..85894696, +
9.37e-99FFCP PHASE2:Hg19::chr8:22020994..22020998,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22020994..22020998, +
9.37e-99FFCP PHASE2:Hg19::chr10:81374752..81374761,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374752..81374761, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316753..81316759,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316753..81316759, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374752..81374761,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374752..81374761, +
9.37e-99FFCP PHASE1:Hg19::chr8:22021454..22021463,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021454..22021463, +
9.37e-99FFCP PHASE2:Hg19::chr2:85889234..85889238,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85889234..85889238, -
9.37e-99FFCP PHASE2:Hg19::chr10:23631651..23631656,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:23631651..23631656, +
9.37e-99FFCP PHASE1:Hg19::chr10:23631651..23631656,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:23631651..23631656, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316558..81316565,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316558..81316565, -
9.37e-99FFCP PHASE2:Hg19::chr8:22020196..22020202,+#_f76d27b960b04ef2fc35ced5428df3b4p13@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr6:32149013..32149018,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr6:32149013..32149018, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316558..81316565,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316558..81316565, -
9.37e-99FFCP PHASE2:Hg19::chr2:85894661..85894668,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85894661..85894668, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020085..22020093,+#_f76d27b960b04ef2fc35ced5428df3b4p12@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr2:85886515..85886520,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85886515..85886520, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316764..81316776,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316764..81316776, -
9.37e-99FFCP PHASE2:Hg19::chr8:22021454..22021463,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021454..22021463, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316764..81316776,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316764..81316776, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316023..81316032,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316023..81316032, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021482..22021493,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021482..22021493, +
9.37e-99FFCP PHASE2:Hg19::chr10:81374462..81374469,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374462..81374469, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316023..81316032,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81316023..81316032, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374462..81374469,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374462..81374469, +
9.37e-99FFCP PHASE1:Hg19::chr2:85892915..85892916,-#_f76d27b960b04ef2fc35ced5428df3b4p40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr8:22021903..22021951,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021903..22021951, -
9.37e-99FFCP PHASE1:Hg19::chr3:127109563..127109564,-#_f76d27b960b04ef2fc35ced5428df3b4p2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE1:Hg19::chr6:117746871..117746882,-#_f76d27b960b04ef2fc35ced5428df3b4p10@ROS1
9.37e-99FFCP PHASE2:Hg19::chr8:22021482..22021493,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr8:22021482..22021493, +
9.37e-99FFCP PHASE1:Hg19::chr2:85885348..85885355,-#_f76d27b960b04ef2fc35ced5428df3b4p@chr2:85885348..85885355, -
9.37e-99FFCP PHASE2:Hg19::chr2:85892885..85892890,-#_f76d27b960b04ef2fc35ced5428df3b4p23@SFTPB
9.37e-99FFCP PHASE2:Hg19::chr10:81374819..81374828,+#_f76d27b960b04ef2fc35ced5428df3b4p@chr10:81374819..81374828, +
2.55e-98FFCP PHASE2:Hg19::chr2:85890569..85890576,-#_1b1b7e4835ba2e8368e3adb3e537cd18p24@SFTPB
2.55e-98FFCP PHASE2:Hg19::chr1:155972294..155972308,-#_1b1b7e4835ba2e8368e3adb3e537cd18p5@ENST00000454974
2.55e-98FFCP PHASE2:Hg19::chr17:66539483..66539491,+#_1b1b7e4835ba2e8368e3adb3e537cd18p1@AK127041
2.55e-98FFCP PHASE2:Hg19::chr6:30905155..30905161,-#_1b1b7e4835ba2e8368e3adb3e537cd18p@chr6:30905155..30905161, -
2.55e-98FFCP PHASE2:Hg19::chr2:120303717..120303738,+#_1b1b7e4835ba2e8368e3adb3e537cd18p@chr2:120303717..120303738, +
2.55e-98FFCP PHASE2:Hg19::chr2:85886640..85886647,+#_1b1b7e4835ba2e8368e3adb3e537cd18p@chr2:85886640..85886647, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002171&oldid=3277393"