Personal tools

UBERON:0002257: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002257
|alt_id=UBERON:FMA_77431-MA_0001134
|name=ventral horn of spinal cord
|namespace=
|def="the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
|xref=EMAPA:18575;;FMA:256541;;MA:0001134;;ncithesaurus:Ventral_Horn_of_the_Spinal_Cord;;NIF_GrossAnatomy:birnlex_2668;;SCTID:279443000;;VHOG:0001288;;ZFA:0000702
|is_a=UBERON:0001948
|synonym="anterior gray column of spinal cord" EXACT [FMA:256541];;"anterior gray horn of spinal cord" EXACT [FMA:256541];;"anterior grey column of spinal cord" EXACT [];;"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord ventral horn" EXACT [];;"ventral gray column of spinal cord" EXACT [FMA:256541];;"ventral gray matter of spinal cord" EXACT [FMA:256541];;"ventral grey column of spinal cord" EXACT [];;"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"ventral horn spinal cord" EXACT [ZFA:0000702];;"ventral region of spinal cord" EXACT [];;"ventral spinal cord" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_77431-MA_0001134
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002257
|is_a=UBERON:0015212 ;;UBERON:0016550
|is_obsolete=
|located_in=
|located_in=
|name=ventral horn of spinal cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002315
|part_of=UBERON:0002315
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=vertebrate_core
|synonym="anterior gray column of spinal cord" EXACT [FMA:256541];;"anterior gray horn of spinal cord" EXACT [FMA:256541];;"anterior grey column of spinal cord" EXACT [];;"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord ventral horn" EXACT [];;"ventral gray column of spinal cord" EXACT [FMA:256541];;"ventral gray matter of spinal cord" EXACT [FMA:256541];;"ventral grey column of spinal cord" EXACT [];;"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"ventral horn spinal cord" EXACT [ZFA:0000702];;"ventral region of spinal cord" EXACT [];;"ventral spinal cord" EXACT []
|union_of=
|xref=EMAPA:18575;;FMA:256541;;MA:0001134;;ncithesaurus:Ventral_Horn_of_the_Spinal_Cord;;NIF_GrossAnatomy:birnlex_2668;;SCTID:279443000;;TAO:0000702;;VHOG:0001288;;ZFA:0000702
}}
}}

Latest revision as of 17:28, 12 September 2014

Name:ventral horn of spinal cord
Namespace:FANTOM
Definition:"the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
Xrefs:
links:

EMAPA:18575
FMA:256541
MA:0001134
ncithesaurus:Ventral_Horn_of_the_Spinal_Cord
NIF_GrossAnatomy:birnlex_2668
SCTID:279443000
TAO:0000702
VHOG:0001288

ZFA:0000702
Synonyms: "anterior gray column of spinal cord" EXACT [FMA:256541]
"anterior gray horn of spinal cord" EXACT [FMA:256541]
"anterior grey column of spinal cord" EXACT []
"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"spinal cord ventral horn" EXACT []
"ventral gray column of spinal cord" EXACT [FMA:256541]
"ventral gray matter of spinal cord" EXACT [FMA:256541]
"ventral grey column of spinal cord" EXACT []
"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"ventral horn spinal cord" EXACT [ZFA:0000702]
"ventral region of spinal cord" EXACT []
"ventral spinal cord" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_77431-MA_0001134
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0015212(lateral structure),UBERON:0016550(spinal cord column)
part_of:UBERON:0002315(gray matter of spinal cord)



Children

part of:CL:0002612 (neuron of the ventral spinal cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002257 (ventral horn of spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002257&oldid=3277411"