UBERON:0002257: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002257
|name=ventral horn of spinal cord
|namespace=
|def="the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the ma...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_77431-MA_0001134 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002257 | |||
|is_a=UBERON:0015212 ;;UBERON:0016550 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=ventral horn of spinal cord | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002315 | |part_of=UBERON:0002315 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset=vertebrate_core | |||
|synonym="anterior gray column of spinal cord" EXACT [FMA:256541];;"anterior gray horn of spinal cord" EXACT [FMA:256541];;"anterior grey column of spinal cord" EXACT [];;"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord ventral horn" EXACT [];;"ventral gray column of spinal cord" EXACT [FMA:256541];;"ventral gray matter of spinal cord" EXACT [FMA:256541];;"ventral grey column of spinal cord" EXACT [];;"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"ventral horn spinal cord" EXACT [ZFA:0000702];;"ventral region of spinal cord" EXACT [];;"ventral spinal cord" EXACT [] | |||
|union_of= | |||
|xref=EMAPA:18575;;FMA:256541;;MA:0001134;;ncithesaurus:Ventral_Horn_of_the_Spinal_Cord;;NIF_GrossAnatomy:birnlex_2668;;SCTID:279443000;;TAO:0000702;;VHOG:0001288;;ZFA:0000702 | |||
}} | }} | ||
Latest revision as of 17:28, 12 September 2014
| Name: | ventral horn of spinal cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112] | ||
| Xrefs: |
| ||
| Synonyms: |
"anterior gray column of spinal cord" EXACT [FMA:256541] "anterior gray horn of spinal cord" EXACT [FMA:256541] "anterior grey column of spinal cord" EXACT [] "anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668] "spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668] "spinal cord ventral horn" EXACT [] "ventral gray column of spinal cord" EXACT [FMA:256541] "ventral gray matter of spinal cord" EXACT [FMA:256541] "ventral grey column of spinal cord" EXACT [] "ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668] "ventral horn spinal cord" EXACT [ZFA:0000702] "ventral region of spinal cord" EXACT [] "ventral spinal cord" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_77431-MA_0001134 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0015212(lateral structure),UBERON:0016550(spinal cord column) |
|---|---|
| part_of: | UBERON:0002315(gray matter of spinal cord) |
Children
| part of: | CL:0002612 (neuron of the ventral spinal cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002257 (ventral horn of spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_2a573739aea57452f5d021ebb1899d54 | p@chr11:96148092..96148105, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_2a573739aea57452f5d021ebb1899d54 | p@chr11:96148092..96148105, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_dd8ef7587f20725d2ee5725210d6956e | p13@Grm5 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_dd8ef7587f20725d2ee5725210d6956e | p13@Grm5 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_63c32c5b57ee44de986efe1a1aa0df5a | p@chr5:23665663..23665666, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_63c32c5b57ee44de986efe1a1aa0df5a | p@chr5:23665663..23665666, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_8dea0509d24c490659d1c5b57b6383a9 | p@chr5:77527885..77527900, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_8dea0509d24c490659d1c5b57b6383a9 | p@chr5:77527885..77527900, + |
| 7.35e-53 | FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_ccdd79178b5a949c734b7b2f9db1011d | p@chr12:47797986..47798011, - |
| 7.35e-53 | FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_ccdd79178b5a949c734b7b2f9db1011d | p@chr12:47797986..47798011, - |
| 1.1e-52 | FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_f9ddc57ad1debac66326e314df245f60 | p3@Prrxl1 |
| 1.1e-52 | FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_f9ddc57ad1debac66326e314df245f60 | p@chr18:84268738..84268777, - |
| 1.1e-52 | FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_f9ddc57ad1debac66326e314df245f60 | p3@Prrxl1 |
| 1.1e-52 | FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_f9ddc57ad1debac66326e314df245f60 | p@chr18:84268738..84268777, - |
| 1.65e-52 | FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_84d9f8bcc370fc544e917a9b4262b95b | p@chr10:101630272..101630276, + |
| 1.65e-52 | FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_84d9f8bcc370fc544e917a9b4262b95b | p@chr11:96608388..96608420, + |
| 1.65e-52 | FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_84d9f8bcc370fc544e917a9b4262b95b | p@chr10:101630272..101630276, + |
| 1.65e-52 | FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_84d9f8bcc370fc544e917a9b4262b95b | p@chr11:96608388..96608420, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_d4bf763022eb9bbc41feebad7a1134c1 | p6@Hoxb8 |
| 1.66e-44 | FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_d4bf763022eb9bbc41feebad7a1134c1 | p6@Hoxb8 |
| 1.17e-38 | FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_ed42574ec2744af697484aaf4af65084 | p@chr2:74530108..74530131, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_ed42574ec2744af697484aaf4af65084 | p@chr2:74530108..74530131, + |
| 2.09e-38 | FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7582374ba99e2805528635847fccd655 | p8@Hoxb6 |
| 2.09e-38 | FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7582374ba99e2805528635847fccd655 | p8@Hoxb6 |
| 3.73e-38 | FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_bd2aa38569741fd6c092de4eecffc1d2 | p5@Hoxd10 |
| 3.73e-38 | FFCP PHASE2:Mm9::chr11:96132544..96132553,+#_bd2aa38569741fd6c092de4eecffc1d2 | p6@Hoxb9 |
| 3.73e-38 | FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_bd2aa38569741fd6c092de4eecffc1d2 | p5@Hoxd10 |
| 3.73e-38 | FFCP PHASE1:Mm9::chr11:96132544..96132553,+#_bd2aa38569741fd6c092de4eecffc1d2 | p6@Hoxb9 |
| 2.8e-37 | FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_478a23b7b908ce4f81e0b7a7aab8e123 | p@chr7:6659121..6659133, - |
| 2.8e-37 | FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_478a23b7b908ce4f81e0b7a7aab8e123 | p@chr7:6659121..6659133, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_d69333226542cfda4278ef6e4163dccf | p4@Hoxb9 |
| 3.67e-34 | FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_d69333226542cfda4278ef6e4163dccf | p4@Hoxb9 |
| 7.89e-34 | FFCP PHASE2:Mm9::chr12:110843236..110843239,+#_7d0b9775b6560ebad8be75f01211ec57 | p@chr12:110843236..110843239, + |
| 7.89e-34 | FFCP PHASE1:Mm9::chr12:110843236..110843239,+#_7d0b9775b6560ebad8be75f01211ec57 | p@chr12:110843236..110843239, + |
| 5.97e-33 | FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_0aef32a42817858a5255dbd55fdb2af9 | p6@Slc6a5 |
| 5.97e-33 | FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_0aef32a42817858a5255dbd55fdb2af9 | p6@Slc6a5 |
| 1.16e-30 | FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_b2256bb404330c9480f06a2efdb9623c | p3@Tlx3 |
| 1.16e-30 | FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_b2256bb404330c9480f06a2efdb9623c | p3@Tlx3 |
| 1.83e-30 | FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_36e0c32d14319cf0da6278611bbfd8b7 | p@chr11:96146541..96146544, + |
| 1.83e-30 | FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_36e0c32d14319cf0da6278611bbfd8b7 | p@chr11:96146541..96146544, + |
| 4.03e-30 | FFCP PHASE1:Mm9::chr8:33760116..33760119,-#_a12e08684531ac30d8d9eb7d182d67cd | p@chr8:33760116..33760119, - |
| 4.03e-30 | FFCP PHASE2:Mm9::chr8:33760116..33760119,-#_a12e08684531ac30d8d9eb7d182d67cd | p@chr8:33760116..33760119, - |
| 5.64e-30 | FFCP PHASE1:Mm9::chr12:47886256..47886259,-#_45c466ea2f2c6ce9614c78850b598228 | p@chr12:47886256..47886259, - |
| 5.64e-30 | FFCP PHASE1:Mm9::chr5:89666281..89666294,+#_45c466ea2f2c6ce9614c78850b598228 | p@chr5:89666281..89666294, + |
| 5.64e-30 | FFCP PHASE2:Mm9::chr12:47886256..47886259,-#_45c466ea2f2c6ce9614c78850b598228 | p@chr12:47886256..47886259, - |
| 5.64e-30 | FFCP PHASE2:Mm9::chr5:89666281..89666294,+#_45c466ea2f2c6ce9614c78850b598228 | p@chr5:89666281..89666294, + |
| 5.7e-30 | FFCP PHASE2:Mm9::chr11:104171794..104171805,+#_5d104da7caa6ab931308ef8d7c15a34c | p@chr11:104171794..104171805, + |
| 5.7e-30 | FFCP PHASE1:Mm9::chr11:104171794..104171805,+#_5d104da7caa6ab931308ef8d7c15a34c | p@chr11:104171794..104171805, + |
| 7.89e-30 | FFCP PHASE2:Mm9::chr4:58340140..58340151,+#_ff96f12e064968968931a104c3c2a14e | p@chr4:58340140..58340151, + |
| 7.89e-30 | FFCP PHASE1:Mm9::chr4:58340140..58340151,+#_ff96f12e064968968931a104c3c2a14e | p@chr4:58340140..58340151, + |
| 1.4e-29 | FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_4e43663075274bab4bf7c905bc721286 | p1@Uts2 |
| 1.4e-29 | FFCP PHASE1:Mm9::chr14:94197171..94197177,-#_4e43663075274bab4bf7c905bc721286 | p@chr14:94197171..94197177, - |
| 1.4e-29 | FFCP PHASE2:Mm9::chr14:94197171..94197177,-#_4e43663075274bab4bf7c905bc721286 | p@chr14:94197171..94197177, - |
| 1.4e-29 | FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_4e43663075274bab4bf7c905bc721286 | p1@Uts2 |
| 1.54e-29 | FFCP PHASE2:Mm9::chr8:84578004..84578010,+#_e7ff1db32b68874b1118a1f3d0b10016 | p@chr8:84578004..84578010, + |
| 1.54e-29 | FFCP PHASE1:Mm9::chr8:84578004..84578010,+#_e7ff1db32b68874b1118a1f3d0b10016 | p@chr8:84578004..84578010, + |
| 1.11e-27 | FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_3505e865c1f6e7118afb61a0f89bc0af | p1@Gbx1 |
| 1.11e-27 | FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_3505e865c1f6e7118afb61a0f89bc0af | p1@Gbx1 |
| 1.11e-27 | FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_3505e865c1f6e7118afb61a0f89bc0af | p@chr2:70399563..70399583, + |
| 1.11e-27 | FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_3505e865c1f6e7118afb61a0f89bc0af | p@chr2:70399563..70399583, + |
| 2.06e-27 | FFCP PHASE2:Mm9::chrX:98516253..98516269,+#_3352ffea12b3920d4907480a7ebf8941 | p@chrX:98516253..98516269, + |
| 2.06e-27 | FFCP PHASE1:Mm9::chrX:98516253..98516269,+#_3352ffea12b3920d4907480a7ebf8941 | p@chrX:98516253..98516269, + |
| 3.1e-27 | FFCP PHASE2:Mm9::chr13:97841582..97841592,+#_8e590551bd2f0e35f0ad0a3dc72d43cc | p5@Fam169a |
| 3.1e-27 | FFCP PHASE1:Mm9::chr13:97841582..97841592,+#_8e590551bd2f0e35f0ad0a3dc72d43cc | p5@Fam169a |
| 3.1e-27 | FFCP PHASE2:Mm9::chr7:144388046..144388053,-#_8e590551bd2f0e35f0ad0a3dc72d43cc | p@chr7:144388046..144388053, - |
| 3.1e-27 | FFCP PHASE1:Mm9::chr7:144388046..144388053,-#_8e590551bd2f0e35f0ad0a3dc72d43cc | p@chr7:144388046..144388053, - |
| 4.66e-27 | FFCP PHASE2:Mm9::chr10:59862497..59862520,+#_5d564c298faab2ea4339387b4c0e67a0 | p2@Gm17455 |
| 4.66e-27 | FFCP PHASE1:Mm9::chr10:59862497..59862520,+#_5d564c298faab2ea4339387b4c0e67a0 | p2@Gm17455 |
| 6.99e-27 | FFCP PHASE1:Mm9::chr2:180625404..180625417,+#_742ee434af984cff9e266779e6b4686d | p@chr2:180625404..180625417, + |
| 6.99e-27 | FFCP PHASE2:Mm9::chr2:180625404..180625417,+#_742ee434af984cff9e266779e6b4686d | p@chr2:180625404..180625417, + |
| 8.55e-27 | FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_e540e4e96eb2d329660c8dfe4c4e8c0b | p3@Slc6a5 |
| 8.55e-27 | FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_e540e4e96eb2d329660c8dfe4c4e8c0b | p3@Slc6a5 |
| 2.12e-25 | FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_5a8ddf7589028aee7d0805d9eee97305 | p@chr2:135885511..135885540, + |
| 2.12e-25 | FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_5a8ddf7589028aee7d0805d9eee97305 | p@chr2:135885511..135885540, + |
| 2.56e-25 | FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_4fe4b75bfcaba7c7ad2178be385cdd47 | p12@6330527O06Rik |
| 2.56e-25 | FFCP PHASE1:Mm9::chr13:97419784..97419792,-#_4fe4b75bfcaba7c7ad2178be385cdd47 | p@chr13:97419784..97419792, - |
| 2.56e-25 | FFCP PHASE2:Mm9::chr13:97419784..97419792,-#_4fe4b75bfcaba7c7ad2178be385cdd47 | p@chr13:97419784..97419792, - |
| 2.56e-25 | FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_4fe4b75bfcaba7c7ad2178be385cdd47 | p12@6330527O06Rik |
| 9.4e-25 | FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_9885b2e2770170030b425ff2d1307a8b | p5@Slc6a5 |
| 9.4e-25 | FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_9885b2e2770170030b425ff2d1307a8b | p1@Npff |
| 9.4e-25 | FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_9885b2e2770170030b425ff2d1307a8b | p1@Npff |
| 9.4e-25 | FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_9885b2e2770170030b425ff2d1307a8b | p5@Slc6a5 |
| 1.13e-24 | FFCP PHASE1:Mm9::chr5:65522238..65522249,+#_450d49705e29db275c165566b6d749af | p9@Klhl5 |
| 1.13e-24 | FFCP PHASE2:Mm9::chr5:65522238..65522249,+#_450d49705e29db275c165566b6d749af | p9@Klhl5 |
| 1.74e-24 | FFCP PHASE1:Mm9::chr7:64495660..64495664,-#_c48ae30d7a639f04723e61f336febe38 | p@chr7:64495660..64495664, - |
| 1.74e-24 | FFCP PHASE2:Mm9::chr7:64495660..64495664,-#_c48ae30d7a639f04723e61f336febe38 | p@chr7:64495660..64495664, - |
| 2.28e-24 | FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_b9e4f79edc1c8792d3ffbca307d5fc49 | p@chr2:70053872..70053879, + |
| 2.28e-24 | FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_b9e4f79edc1c8792d3ffbca307d5fc49 | p@chr2:70053872..70053879, + |
| 2.36e-24 | FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_954b75df0018c4274234d0099bd2a7ba | p4@Slc6a5 |
| 2.36e-24 | FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_954b75df0018c4274234d0099bd2a7ba | p4@Slc6a5 |
| 2.99e-24 | FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_ec29addebf403e503928b4360ade5e40 | p4@Tlx3 |
| 2.99e-24 | FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_ec29addebf403e503928b4360ade5e40 | p@chr7:67121440..67121451, - |
| 2.99e-24 | FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_ec29addebf403e503928b4360ade5e40 | p4@Tlx3 |
| 2.99e-24 | FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_ec29addebf403e503928b4360ade5e40 | p@chr7:67121440..67121451, - |
| 2.99e-24 | FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_ec29addebf403e503928b4360ade5e40 | p@chr1:66486342..66486351, + |
| 2.99e-24 | FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_ec29addebf403e503928b4360ade5e40 | p@chr1:66486342..66486351, + |
| 3.91e-24 | FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_0a706b3dcca9fca10e36c355b0b207a2 | p@chr12:85023868..85023879, + |
| 3.91e-24 | FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_0a706b3dcca9fca10e36c355b0b207a2 | p@chr12:85023868..85023879, + |
| 4.08e-24 | FFCP PHASE1:Mm9::chr11:83696202..83696230,+#_1b22b027cec83f043c847ef16250e341 | p@chr11:83696202..83696230, + |
| 4.08e-24 | FFCP PHASE2:Mm9::chr11:83696202..83696230,+#_1b22b027cec83f043c847ef16250e341 | p@chr11:83696202..83696230, + |
