Personal tools

UBERON:0002314: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002314
|alt_id=UBERON:FMA_83902-MA_0000211
|name=midbrain tectum
|namespace=
|def="Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum]
|xref=BM:MB-Tec;;BTO:0001793;;EFO:0000920;;EHDAA2:0004474;;EMAPA:19051;;FMA:83902;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png;;MA:0000211;;MAT:0000451;;ncithesaurus:Tectum_Mesencephali;;NIF_GrossAnatomy:birnlex_1032;;SCTID:362394008;;VHOG:0001388
|is_a=UBERON:0002950
|synonym="mesencephalic tectum" EXACT [ZFA:0000445];;"neuraxis tectum" EXACT [];;"tectum" EXACT [];;"tectum mesencephali" EXACT [BTO:0001793]
|comment=In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP].
|comment=In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP].
|alt_id=UBERON:FMA_83902-MA_0000211
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0005882
|develops_from=UBERON:0005882
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002314
|is_a=UBERON:0002950
|is_obsolete=
|located_in=
|located_in=
|name=midbrain tectum
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001891
|part_of=UBERON:0001891
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="mesencephalic tectum" EXACT [ZFA:0000445];;"neuraxis tectum" EXACT [];;"t. mesencephali" RELATED LATIN [Wikipedia:Midbrain_tectum];;"tectum" EXACT [];;"tectum mesencephali" EXACT [BTO:0001793]
|union_of=
|xref=BM:MB-Tec;;BTO:0001793;;EFO:0000920;;EHDAA2:0004474;;EMAPA:19051;;FMA:83902;;http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png;;MA:0000211;;MAT:0000451;;ncithesaurus:Tectum_Mesencephali;;NIF_GrossAnatomy:birnlex_1032;;SCTID:362394008;;TAO:0001353;;VHOG:0001388
}}
}}

Latest revision as of 17:29, 12 September 2014

Name:midbrain tectum
Namespace:FANTOM
Definition:"Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum]
Xrefs:
links:

BM:MB-Tec
BTO:0001793
EFO:0000920
EHDAA2:0004474
EMAPA:19051
FMA:83902
[ Gray685.png Gray685.png]
[ 200px-Gray685.png 200px-Gray685.png]
MA:0000211
MAT:0000451
ncithesaurus:Tectum_Mesencephali
NIF_GrossAnatomy:birnlex_1032
SCTID:362394008
TAO:0001353

VHOG:0001388
Synonyms: "mesencephalic tectum" EXACT [ZFA:0000445]
"neuraxis tectum" EXACT []
"t. mesencephali" RELATED LATIN [Wikipedia:Midbrain_tectum]
"tectum" EXACT []
"tectum mesencephali" EXACT [BTO:0001793]
Comments:In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP].
Alt_id: UBERON:FMA_83902-MA_0000211
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002950(regional part of midbrain)
develops_from:UBERON:0005882(neural tube alar plate)
part_of:UBERON:0001891(midbrain)



Children

part of:UBERON:0002259 (corpora quadrigemina)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 16-22A4 (corpora quadrigemina, adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002314 (midbrain tectum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_dd5d34c00efd994ba472fc474a5f201fp@chr1:158200818..158200829, -
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_dd5d34c00efd994ba472fc474a5f201fp@chr1:158200818..158200829, -
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_f53d6eaaf29b9f7707d500b66d46da1ap@chr15:22719411..22719436, +
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_f53d6eaaf29b9f7707d500b66d46da1ap19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_f53d6eaaf29b9f7707d500b66d46da1ap@chr15:22719411..22719436, +
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_f53d6eaaf29b9f7707d500b66d46da1ap19@Rgs8
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_838afba71ecb52f0d414c703180bdf1dp@chr2:127098489..127098493, -
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_838afba71ecb52f0d414c703180bdf1dp@chr2:127098489..127098493, -
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_be53148a8048ba6877494aa1b12c883dp@chr2:158208771..158208772, +
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_be53148a8048ba6877494aa1b12c883dp@chr2:158208771..158208772, +
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_be53148a8048ba6877494aa1b12c883dp@chr16:96721083..96721092, +
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_be53148a8048ba6877494aa1b12c883dp@chr16:96721083..96721092, +
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_d0e82ecdebadbeb8db5297a353e5f857p1@ENSMUST00000157206
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_d0e82ecdebadbeb8db5297a353e5f857p1@ENSMUST00000157206
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_e06452d8e8b9417eef283bd59286d917p7@Adipor2
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_e06452d8e8b9417eef283bd59286d917p7@Adipor2
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_9bfbfd3e42132c33fc2ee1c249fd06cap@chr14:52528327..52528336, -
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_9bfbfd3e42132c33fc2ee1c249fd06cap@chr14:52528327..52528336, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_b8a6d8fb23350708685aa99be2efd50dp@chr19:32177340..32177351, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_b8a6d8fb23350708685aa99be2efd50dp@chr19:32177340..32177351, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_6d3b154ed14e42ad4d5e3943f7eedfb0p@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_6d3b154ed14e42ad4d5e3943f7eedfb0p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_6d3b154ed14e42ad4d5e3943f7eedfb0p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_6d3b154ed14e42ad4d5e3943f7eedfb0p@chr4:83035887..83035924, -
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_63c01f45dc2431ca924ae7ed31541e73p@chr8:123151369..123151375, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_63c01f45dc2431ca924ae7ed31541e73p@chr8:123151369..123151375, +
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_a1fef5218c7b0a5b999e1191c9456833p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_a1fef5218c7b0a5b999e1191c9456833p3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_a1fef5218c7b0a5b999e1191c9456833p3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_a1fef5218c7b0a5b999e1191c9456833p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_a1fef5218c7b0a5b999e1191c9456833p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_a1fef5218c7b0a5b999e1191c9456833p@chr8:108091532..108091548, -
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_856b17154c18c716692c57914c4aed7ep@chr1:101686777..101686780, +
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_856b17154c18c716692c57914c4aed7ep@chr1:101686777..101686780, +
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_c45dfbc5a36ec1803b155f9d8a3213d0p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_c45dfbc5a36ec1803b155f9d8a3213d0p6@Ptprr
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_c45dfbc5a36ec1803b155f9d8a3213d0p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_c45dfbc5a36ec1803b155f9d8a3213d0p6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_c45dfbc5a36ec1803b155f9d8a3213d0p3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_c45dfbc5a36ec1803b155f9d8a3213d0p9@Clasp2
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_c45dfbc5a36ec1803b155f9d8a3213d0p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_c45dfbc5a36ec1803b155f9d8a3213d0p3@Ninj2
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_d034ce458c29f2d72a9f64bbd961e91cp19@Gas7
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_d034ce458c29f2d72a9f64bbd961e91cp19@Gas7
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_30941ea0f28f8675268e49c9a9cf1dc4p@chr17:8492594..8492603, -
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr19:47099743..47099759, +
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_30941ea0f28f8675268e49c9a9cf1dc4p1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_30941ea0f28f8675268e49c9a9cf1dc4p15@Ccdc92
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr11:55886412..55886420, +
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_30941ea0f28f8675268e49c9a9cf1dc4p1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_30941ea0f28f8675268e49c9a9cf1dc4p@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_30941ea0f28f8675268e49c9a9cf1dc4p15@Ccdc92
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_30941ea0f28f8675268e49c9a9cf1dc4p@chr14:33139881..33139891, +
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_dc12e20a7cafb3382a6366c2f5d0ed4bp63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_dc12e20a7cafb3382a6366c2f5d0ed4bp63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_dc12e20a7cafb3382a6366c2f5d0ed4bp@chr16:96720848..96720858, +
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_dc12e20a7cafb3382a6366c2f5d0ed4bp@chr16:96720848..96720858, +
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_b70357752d60cd2a19f1f6f04e75f63ep@chr14:93478934..93478944, -
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_b70357752d60cd2a19f1f6f04e75f63ep@chr14:93478934..93478944, -
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_d5e9203c315904359bad8d5ede7d05dcp2@Ghrh
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_d5e9203c315904359bad8d5ede7d05dcp2@Ghrh
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_5f7ac475bd183abcf62c0cbe60fc3b55p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_5f7ac475bd183abcf62c0cbe60fc3b55p8@St18
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_5f7ac475bd183abcf62c0cbe60fc3b55p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_5f7ac475bd183abcf62c0cbe60fc3b55p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_5f7ac475bd183abcf62c0cbe60fc3b55p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_5f7ac475bd183abcf62c0cbe60fc3b55p8@St18
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_5f7ac475bd183abcf62c0cbe60fc3b55p7@Fam169a
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_5f7ac475bd183abcf62c0cbe60fc3b55p@chr2:31133553..31133564, +
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_a27073b4f857f9ba06e73bc5e083dfe1p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_a27073b4f857f9ba06e73bc5e083dfe1p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_a27073b4f857f9ba06e73bc5e083dfe1p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_a27073b4f857f9ba06e73bc5e083dfe1p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_a27073b4f857f9ba06e73bc5e083dfe1p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_a27073b4f857f9ba06e73bc5e083dfe1p@chr2:163149068..163149077, +
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_83a6ef6aa30fbadf28ea0e399fa79b9fp5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_83a6ef6aa30fbadf28ea0e399fa79b9fp6@Skp1a
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_83a6ef6aa30fbadf28ea0e399fa79b9fp5@Rnf34
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_83a6ef6aa30fbadf28ea0e399fa79b9fp6@Skp1a
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_9651cc3ea47cf253f6c8d429a0949c2bp@chr6:126588640..126588687, -
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_9651cc3ea47cf253f6c8d429a0949c2bp@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_9651cc3ea47cf253f6c8d429a0949c2bp6@Ap2a1
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_9651cc3ea47cf253f6c8d429a0949c2bp@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_9651cc3ea47cf253f6c8d429a0949c2bp13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_9651cc3ea47cf253f6c8d429a0949c2bp@chr10:31110259..31110265, -
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_9651cc3ea47cf253f6c8d429a0949c2bp13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_9651cc3ea47cf253f6c8d429a0949c2bp6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_9651cc3ea47cf253f6c8d429a0949c2bp@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_9651cc3ea47cf253f6c8d429a0949c2bp@chr6:126588640..126588687, -
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_06b93049d46f10e2215e264721da5791p3@Rgs17
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_06b93049d46f10e2215e264721da5791p3@Rgs17
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_dcd96565cf8f7be2f115a0454d7bb99fp14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_dcd96565cf8f7be2f115a0454d7bb99fp1@ENSMUST00000124586
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_dcd96565cf8f7be2f115a0454d7bb99fp14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_dcd96565cf8f7be2f115a0454d7bb99fp1@ENSMUST00000124586

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002314&oldid=3277420"