UBERON:0002495: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:MA_0002802-FMA_7474 | ||
| | |anatomical_img_id=FMA:7474 | ||
|comment=Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] | |comment=Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] | ||
|created_by= | |created_by= | ||
| | |def="Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO]." [VSAO:wd, Wikipedia:Long_bone] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002495 | |||
|is_a=UBERON:0001474 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=long bone | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002091 | |part_of=UBERON:0002091 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0004256;;FMA:7474;;galen:LongBone;;MA:0002802;;ncithesaurus:Long_Bone;;OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA;;SCTID:332709000 | |||
}} | }} | ||
Latest revision as of 17:33, 12 September 2014
| Name: | long bone | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO]." [VSAO:wd, Wikipedia:Long_bone] | ||
| Xrefs: |
| ||
| Comments: | Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] | ||
| Alt_id: | UBERON:MA_0002802-FMA_7474 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001474(bone element) |
|---|---|
| part_of: | UBERON:0002091(appendicular skeleton) |
Children
| is a: | UBERON:0003606 (limb long bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002495 (long bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_acebd46883c9d44463c5dacaa72d7a98 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_acebd46883c9d44463c5dacaa72d7a98 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_d022df6d1d793061171e865febccf2fa | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_d022df6d1d793061171e865febccf2fa | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_d022df6d1d793061171e865febccf2fa | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_d022df6d1d793061171e865febccf2fa | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_d022df6d1d793061171e865febccf2fa | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_d022df6d1d793061171e865febccf2fa | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_f2c0d0a586dd08dee0ae9fd1a8508c97 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_f2c0d0a586dd08dee0ae9fd1a8508c97 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_9a109889d33edbdc4a67fa4ce3546449 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_9a109889d33edbdc4a67fa4ce3546449 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_eb4564512297922faeee528703b6a5a9 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_eb4564512297922faeee528703b6a5a9 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_eb4564512297922faeee528703b6a5a9 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_eb4564512297922faeee528703b6a5a9 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_eb4564512297922faeee528703b6a5a9 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_eb4564512297922faeee528703b6a5a9 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_eb4564512297922faeee528703b6a5a9 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_eb4564512297922faeee528703b6a5a9 | p@chr6:4490674..4490679, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_c55e3fa6e653d8ef285cdc5faf09e852 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_c55e3fa6e653d8ef285cdc5faf09e852 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_6e921f6e360495d33d9c25d659c5ce14 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_6e921f6e360495d33d9c25d659c5ce14 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_fc3321de3e20c908d1f1f2e2d98c85de | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_fc3321de3e20c908d1f1f2e2d98c85de | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_1cad8225af33b629e54ff96282993596 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_1cad8225af33b629e54ff96282993596 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_ebc8a29cabd704b904c0fcfcb41069e3 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_ebc8a29cabd704b904c0fcfcb41069e3 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_a8ba166c4c35599f891211f985923a32 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_a8ba166c4c35599f891211f985923a32 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_f5233def2050c869025985f8ddaafe68 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_f5233def2050c869025985f8ddaafe68 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_34212ec7fd839f86b67b7a7d07e2be3e | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_34212ec7fd839f86b67b7a7d07e2be3e | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_34212ec7fd839f86b67b7a7d07e2be3e | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_34212ec7fd839f86b67b7a7d07e2be3e | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_3a59b1e0c091d20bf18657866c3fbf7e | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_3a59b1e0c091d20bf18657866c3fbf7e | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_3a59b1e0c091d20bf18657866c3fbf7e | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_3a59b1e0c091d20bf18657866c3fbf7e | p4@Lipc |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_765d35828b1149444e6d1b78bbaafda4 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_765d35828b1149444e6d1b78bbaafda4 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_84a9e4181692664f3077c0738fe93092 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_84a9e4181692664f3077c0738fe93092 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_84a9e4181692664f3077c0738fe93092 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_84a9e4181692664f3077c0738fe93092 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_6236360f0ffa96e36c4a04de94024f73 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_6236360f0ffa96e36c4a04de94024f73 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_4254a165f45fd38c3442f9f78de8bfe4 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_4254a165f45fd38c3442f9f78de8bfe4 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_4254a165f45fd38c3442f9f78de8bfe4 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_4254a165f45fd38c3442f9f78de8bfe4 | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_9e8ec6931d1316c1de653c7784f62bb3 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_9e8ec6931d1316c1de653c7784f62bb3 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_6e324731079b1c4e5d82df6fdbb34620 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_6e324731079b1c4e5d82df6fdbb34620 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_746356eb8dd806aff753fc5e1976a631 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_746356eb8dd806aff753fc5e1976a631 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_9e4d6c51fdfbbaef9cc3a29ef10c9e57 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_9e4d6c51fdfbbaef9cc3a29ef10c9e57 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_4fbfa27d29e9060ab62340d88dcc7ade | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_4fbfa27d29e9060ab62340d88dcc7ade | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_4fbfa27d29e9060ab62340d88dcc7ade | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_4fbfa27d29e9060ab62340d88dcc7ade | p1@Msmp |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_cf5502913cbd43952f4abbbd44fa3767 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_cf5502913cbd43952f4abbbd44fa3767 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_cf5502913cbd43952f4abbbd44fa3767 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_cf5502913cbd43952f4abbbd44fa3767 | p@chr6:90552017..90552024, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_737d51f35dec23bb5f828b9f1f5cdd28 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_737d51f35dec23bb5f828b9f1f5cdd28 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_9ce852a7a2c5ba28c18f6eabb99c1b03 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_9ce852a7a2c5ba28c18f6eabb99c1b03 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_2ee94cb9e5abc041ba569889426618c8 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_2ee94cb9e5abc041ba569889426618c8 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_c06a9765ee06a3b3a2c52a19619038dd | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_c06a9765ee06a3b3a2c52a19619038dd | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_05bb27fb2dd4aeaffcb1d77283027c5a | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_05bb27fb2dd4aeaffcb1d77283027c5a | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_dba25351d1ed70891c70538721e83fba | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_dba25351d1ed70891c70538721e83fba | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_baf81bc4034f5f381fed84dd9045eff5 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_baf81bc4034f5f381fed84dd9045eff5 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_baf81bc4034f5f381fed84dd9045eff5 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_baf81bc4034f5f381fed84dd9045eff5 | p@chr7:133600635..133600663, + |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_d5b5d24423b577681d138278593d5e17 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_d5b5d24423b577681d138278593d5e17 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_ec4bedf0d2eae426bd52c52bce41b8f4 | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_ec4bedf0d2eae426bd52c52bce41b8f4 | p1@Mepe |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_6a05e37cbcbfbf5812960547e37eb9ef | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_6a05e37cbcbfbf5812960547e37eb9ef | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_6a05e37cbcbfbf5812960547e37eb9ef | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_6a05e37cbcbfbf5812960547e37eb9ef | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_9d23240a89b9f7698ee6568228ea0097 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_9d23240a89b9f7698ee6568228ea0097 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_9d23240a89b9f7698ee6568228ea0097 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_9d23240a89b9f7698ee6568228ea0097 | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_7fd3b965322a0b325af9d9fcd0b04aaa | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_7fd3b965322a0b325af9d9fcd0b04aaa | p2@Siglec15 |
