UBERON:0002784: Difference between revisions
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(Created page with "{{UBERON
|id=UBERON:0002784
|name=regional part of diencephalon
|namespace=
|def="A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
|xref=...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005 | ||
| | |anatomical_img_id=FMA:62005 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002784 | |||
|is_a=UBERON:0002780 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=regional part of diencephalon | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001894 | |part_of=UBERON:0001894 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="anatomical structure of brain of between brain" EXACT [OBOL:automatic];;"anatomical structure of brain of diencephalon" EXACT [OBOL:automatic];;"anatomical structure of brain of interbrain" EXACT [OBOL:automatic];;"anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic];;"between brain anatomical structure of brain" EXACT [OBOL:automatic];;"between brain biological structure of brain" EXACT [OBOL:automatic];;"between brain brain anatomical structure" EXACT [OBOL:automatic];;"between brain brain biological structure" EXACT [OBOL:automatic];;"between brain neuraxis segment" EXACT [OBOL:automatic];;"between brain regional part of brain" EXACT [OBOL:automatic];;"between brain segment of brain" EXACT [OBOL:automatic];;"biological structure of brain of between brain" EXACT [OBOL:automatic];;"biological structure of brain of diencephalon" EXACT [OBOL:automatic];;"biological structure of brain of interbrain" EXACT [OBOL:automatic];;"biological structure of brain of mature diencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of between brain" EXACT [OBOL:automatic];;"brain anatomical structure of diencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of interbrain" EXACT [OBOL:automatic];;"brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic];;"brain biological structure of between brain" EXACT [OBOL:automatic];;"brain biological structure of diencephalon" EXACT [OBOL:automatic];;"brain biological structure of interbrain" EXACT [OBOL:automatic];;"brain biological structure of mature diencephalon" EXACT [OBOL:automatic];;"diencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"diencephalon biological structure of brain" EXACT [OBOL:automatic];;"diencephalon brain anatomical structure" EXACT [OBOL:automatic];;"diencephalon brain biological structure" EXACT [OBOL:automatic];;"diencephalon neuraxis segment" EXACT [OBOL:automatic];;"diencephalon regional part of brain" EXACT [OBOL:automatic];;"diencephalon segment" EXACT [FMA:62005];;"diencephalon segment of brain" EXACT [OBOL:automatic];;"interbrain anatomical structure of brain" EXACT [OBOL:automatic];;"interbrain biological structure of brain" EXACT [OBOL:automatic];;"interbrain brain anatomical structure" EXACT [OBOL:automatic];;"interbrain brain biological structure" EXACT [OBOL:automatic];;"interbrain neuraxis segment" EXACT [OBOL:automatic];;"interbrain regional part of brain" EXACT [OBOL:automatic];;"interbrain segment of brain" EXACT [OBOL:automatic];;"mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"mature diencephalon biological structure of brain" EXACT [OBOL:automatic];;"mature diencephalon brain anatomical structure" EXACT [OBOL:automatic];;"mature diencephalon brain biological structure" EXACT [OBOL:automatic];;"mature diencephalon neuraxis segment" EXACT [OBOL:automatic];;"mature diencephalon regional part of brain" EXACT [OBOL:automatic];;"mature diencephalon segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of between brain" EXACT [OBOL:automatic];;"neuraxis segment of diencephalon" EXACT [OBOL:automatic];;"neuraxis segment of interbrain" EXACT [OBOL:automatic];;"neuraxis segment of mature diencephalon" EXACT [OBOL:automatic];;"regional part of brain of between brain" EXACT [OBOL:automatic];;"regional part of brain of diencephalon" EXACT [OBOL:automatic];;"regional part of brain of interbrain" EXACT [OBOL:automatic];;"regional part of brain of mature diencephalon" EXACT [OBOL:automatic];;"segment of brain of between brain" EXACT [OBOL:automatic];;"segment of brain of diencephalon" EXACT [OBOL:automatic];;"segment of brain of interbrain" EXACT [OBOL:automatic];;"segment of brain of mature diencephalon" EXACT [OBOL:automatic];;"segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685] | |||
|union_of= | |||
|xref=FMA:62005;;NIF_GrossAnatomy:birnlex_1685 | |||
}} | }} |
Latest revision as of 17:35, 12 September 2014
Name: | regional part of diencephalon | |
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Namespace: | FANTOM | |
Definition: | "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic] | |
Xrefs: |
| |
Synonyms: |
"anatomical structure of brain of between brain" EXACT [OBOL:automatic] "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic] "anatomical structure of brain of interbrain" EXACT [OBOL:automatic] "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic] "between brain anatomical structure of brain" EXACT [OBOL:automatic] "between brain biological structure of brain" EXACT [OBOL:automatic] "between brain brain anatomical structure" EXACT [OBOL:automatic] "between brain brain biological structure" EXACT [OBOL:automatic] "between brain neuraxis segment" EXACT [OBOL:automatic] "between brain regional part of brain" EXACT [OBOL:automatic] "between brain segment of brain" EXACT [OBOL:automatic] "biological structure of brain of between brain" EXACT [OBOL:automatic] "biological structure of brain of diencephalon" EXACT [OBOL:automatic] "biological structure of brain of interbrain" EXACT [OBOL:automatic] "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic] "brain anatomical structure of between brain" EXACT [OBOL:automatic] "brain anatomical structure of diencephalon" EXACT [OBOL:automatic] "brain anatomical structure of interbrain" EXACT [OBOL:automatic] "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic] "brain biological structure of between brain" EXACT [OBOL:automatic] "brain biological structure of diencephalon" EXACT [OBOL:automatic] "brain biological structure of interbrain" EXACT [OBOL:automatic] "brain biological structure of mature diencephalon" EXACT [OBOL:automatic] "diencephalon anatomical structure of brain" EXACT [OBOL:automatic] "diencephalon biological structure of brain" EXACT [OBOL:automatic] "diencephalon brain anatomical structure" EXACT [OBOL:automatic] "diencephalon brain biological structure" EXACT [OBOL:automatic] "diencephalon neuraxis segment" EXACT [OBOL:automatic] "diencephalon regional part of brain" EXACT [OBOL:automatic] "diencephalon segment" EXACT [FMA:62005] "diencephalon segment of brain" EXACT [OBOL:automatic] "interbrain anatomical structure of brain" EXACT [OBOL:automatic] "interbrain biological structure of brain" EXACT [OBOL:automatic] "interbrain brain anatomical structure" EXACT [OBOL:automatic] "interbrain brain biological structure" EXACT [OBOL:automatic] "interbrain neuraxis segment" EXACT [OBOL:automatic] "interbrain regional part of brain" EXACT [OBOL:automatic] "interbrain segment of brain" EXACT [OBOL:automatic] "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic] "mature diencephalon biological structure of brain" EXACT [OBOL:automatic] "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic] "mature diencephalon brain biological structure" EXACT [OBOL:automatic] "mature diencephalon neuraxis segment" EXACT [OBOL:automatic] "mature diencephalon regional part of brain" EXACT [OBOL:automatic] "mature diencephalon segment of brain" EXACT [OBOL:automatic] "neuraxis segment of between brain" EXACT [OBOL:automatic] "neuraxis segment of diencephalon" EXACT [OBOL:automatic] "neuraxis segment of interbrain" EXACT [OBOL:automatic] "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic] "regional part of brain of between brain" EXACT [OBOL:automatic] "regional part of brain of diencephalon" EXACT [OBOL:automatic] "regional part of brain of interbrain" EXACT [OBOL:automatic] "regional part of brain of mature diencephalon" EXACT [OBOL:automatic] "segment of brain of between brain" EXACT [OBOL:automatic] "segment of brain of diencephalon" EXACT [OBOL:automatic] "segment of brain of interbrain" EXACT [OBOL:automatic] "segment of brain of mature diencephalon" EXACT [OBOL:automatic] "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685] | |
Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002780(regional part of forebrain) |
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part_of: | UBERON:0001894(diencephalon) |
Children
is a: | UBERON:0001897 (dorsal plus ventral thalamus),UBERON:0001899 (epithalamus),UBERON:0002757 (regional part of epithalamus),UBERON:0010225 (thalamic complex) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10154-103A1 (thalamus, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10168-103B6 (thalamus - adult, donor10196)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10366-105F6 (thalamus, newborn, donor10223)
- 10370-105G1 (thalamus, adult, donor10258)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002784 (regional part of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data