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{{UBERON
{{UBERON
|id=UBERON:0002784
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005
|name=regional part of diencephalon
|anatomical_img_id=FMA:62005
|namespace=
|def="A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
|xref=FMA:62005;;NIF_GrossAnatomy:birnlex_1685
|is_a=UBERON:0002780
|synonym="anatomical structure of brain of between brain" EXACT [OBOL:automatic];;"anatomical structure of brain of diencephalon" EXACT [OBOL:automatic];;"anatomical structure of brain of interbrain" EXACT [OBOL:automatic];;"anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic];;"between brain anatomical structure of brain" EXACT [OBOL:automatic];;"between brain biological structure of brain" EXACT [OBOL:automatic];;"between brain brain anatomical structure" EXACT [OBOL:automatic];;"between brain brain biological structure" EXACT [OBOL:automatic];;"between brain neuraxis segment" EXACT [OBOL:automatic];;"between brain regional part of brain" EXACT [OBOL:automatic];;"between brain segment of brain" EXACT [OBOL:automatic];;"biological structure of brain of between brain" EXACT [OBOL:automatic];;"biological structure of brain of diencephalon" EXACT [OBOL:automatic];;"biological structure of brain of interbrain" EXACT [OBOL:automatic];;"biological structure of brain of mature diencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of between brain" EXACT [OBOL:automatic];;"brain anatomical structure of diencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of interbrain" EXACT [OBOL:automatic];;"brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic];;"brain biological structure of between brain" EXACT [OBOL:automatic];;"brain biological structure of diencephalon" EXACT [OBOL:automatic];;"brain biological structure of interbrain" EXACT [OBOL:automatic];;"brain biological structure of mature diencephalon" EXACT [OBOL:automatic];;"diencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"diencephalon biological structure of brain" EXACT [OBOL:automatic];;"diencephalon brain anatomical structure" EXACT [OBOL:automatic];;"diencephalon brain biological structure" EXACT [OBOL:automatic];;"diencephalon neuraxis segment" EXACT [OBOL:automatic];;"diencephalon regional part of brain" EXACT [OBOL:automatic];;"diencephalon segment" EXACT [FMA:62005];;"diencephalon segment of brain" EXACT [OBOL:automatic];;"interbrain anatomical structure of brain" EXACT [OBOL:automatic];;"interbrain biological structure of brain" EXACT [OBOL:automatic];;"interbrain brain anatomical structure" EXACT [OBOL:automatic];;"interbrain brain biological structure" EXACT [OBOL:automatic];;"interbrain neuraxis segment" EXACT [OBOL:automatic];;"interbrain regional part of brain" EXACT [OBOL:automatic];;"interbrain segment of brain" EXACT [OBOL:automatic];;"mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"mature diencephalon biological structure of brain" EXACT [OBOL:automatic];;"mature diencephalon brain anatomical structure" EXACT [OBOL:automatic];;"mature diencephalon brain biological structure" EXACT [OBOL:automatic];;"mature diencephalon neuraxis segment" EXACT [OBOL:automatic];;"mature diencephalon regional part of brain" EXACT [OBOL:automatic];;"mature diencephalon segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of between brain" EXACT [OBOL:automatic];;"neuraxis segment of diencephalon" EXACT [OBOL:automatic];;"neuraxis segment of interbrain" EXACT [OBOL:automatic];;"neuraxis segment of mature diencephalon" EXACT [OBOL:automatic];;"regional part of brain of between brain" EXACT [OBOL:automatic];;"regional part of brain of diencephalon" EXACT [OBOL:automatic];;"regional part of brain of interbrain" EXACT [OBOL:automatic];;"regional part of brain of mature diencephalon" EXACT [OBOL:automatic];;"segment of brain of between brain" EXACT [OBOL:automatic];;"segment of brain of diencephalon" EXACT [OBOL:automatic];;"segment of brain of interbrain" EXACT [OBOL:automatic];;"segment of brain of mature diencephalon" EXACT [OBOL:automatic];;"segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
|comment=
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005
|disjoint_from=
|union_of=
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|created_by=
|obo_creation_date=
|def="A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
|subset=
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|derives_from=
|derives_from=
|develops_from=
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|has_quality=
|has_quality=
|id=UBERON:0002784
|is_a=UBERON:0002780
|is_obsolete=
|located_in=
|located_in=
|name=regional part of diencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001894
|part_of=UBERON:0001894
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="anatomical structure of brain of between brain" EXACT [OBOL:automatic];;"anatomical structure of brain of diencephalon" EXACT [OBOL:automatic];;"anatomical structure of brain of interbrain" EXACT [OBOL:automatic];;"anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic];;"between brain anatomical structure of brain" EXACT [OBOL:automatic];;"between brain biological structure of brain" EXACT [OBOL:automatic];;"between brain brain anatomical structure" EXACT [OBOL:automatic];;"between brain brain biological structure" EXACT [OBOL:automatic];;"between brain neuraxis segment" EXACT [OBOL:automatic];;"between brain regional part of brain" EXACT [OBOL:automatic];;"between brain segment of brain" EXACT [OBOL:automatic];;"biological structure of brain of between brain" EXACT [OBOL:automatic];;"biological structure of brain of diencephalon" EXACT [OBOL:automatic];;"biological structure of brain of interbrain" EXACT [OBOL:automatic];;"biological structure of brain of mature diencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of between brain" EXACT [OBOL:automatic];;"brain anatomical structure of diencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of interbrain" EXACT [OBOL:automatic];;"brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic];;"brain biological structure of between brain" EXACT [OBOL:automatic];;"brain biological structure of diencephalon" EXACT [OBOL:automatic];;"brain biological structure of interbrain" EXACT [OBOL:automatic];;"brain biological structure of mature diencephalon" EXACT [OBOL:automatic];;"diencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"diencephalon biological structure of brain" EXACT [OBOL:automatic];;"diencephalon brain anatomical structure" EXACT [OBOL:automatic];;"diencephalon brain biological structure" EXACT [OBOL:automatic];;"diencephalon neuraxis segment" EXACT [OBOL:automatic];;"diencephalon regional part of brain" EXACT [OBOL:automatic];;"diencephalon segment" EXACT [FMA:62005];;"diencephalon segment of brain" EXACT [OBOL:automatic];;"interbrain anatomical structure of brain" EXACT [OBOL:automatic];;"interbrain biological structure of brain" EXACT [OBOL:automatic];;"interbrain brain anatomical structure" EXACT [OBOL:automatic];;"interbrain brain biological structure" EXACT [OBOL:automatic];;"interbrain neuraxis segment" EXACT [OBOL:automatic];;"interbrain regional part of brain" EXACT [OBOL:automatic];;"interbrain segment of brain" EXACT [OBOL:automatic];;"mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"mature diencephalon biological structure of brain" EXACT [OBOL:automatic];;"mature diencephalon brain anatomical structure" EXACT [OBOL:automatic];;"mature diencephalon brain biological structure" EXACT [OBOL:automatic];;"mature diencephalon neuraxis segment" EXACT [OBOL:automatic];;"mature diencephalon regional part of brain" EXACT [OBOL:automatic];;"mature diencephalon segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of between brain" EXACT [OBOL:automatic];;"neuraxis segment of diencephalon" EXACT [OBOL:automatic];;"neuraxis segment of interbrain" EXACT [OBOL:automatic];;"neuraxis segment of mature diencephalon" EXACT [OBOL:automatic];;"regional part of brain of between brain" EXACT [OBOL:automatic];;"regional part of brain of diencephalon" EXACT [OBOL:automatic];;"regional part of brain of interbrain" EXACT [OBOL:automatic];;"regional part of brain of mature diencephalon" EXACT [OBOL:automatic];;"segment of brain of between brain" EXACT [OBOL:automatic];;"segment of brain of diencephalon" EXACT [OBOL:automatic];;"segment of brain of interbrain" EXACT [OBOL:automatic];;"segment of brain of mature diencephalon" EXACT [OBOL:automatic];;"segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
|union_of=
|xref=FMA:62005;;NIF_GrossAnatomy:birnlex_1685
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:regional part of diencephalon
Namespace:FANTOM
Definition:"A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62005

NIF_GrossAnatomy:birnlex_1685
Synonyms: "anatomical structure of brain of between brain" EXACT [OBOL:automatic]
"anatomical structure of brain of diencephalon" EXACT [OBOL:automatic]
"anatomical structure of brain of interbrain" EXACT [OBOL:automatic]
"anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"between brain anatomical structure of brain" EXACT [OBOL:automatic]
"between brain biological structure of brain" EXACT [OBOL:automatic]
"between brain brain anatomical structure" EXACT [OBOL:automatic]
"between brain brain biological structure" EXACT [OBOL:automatic]
"between brain neuraxis segment" EXACT [OBOL:automatic]
"between brain regional part of brain" EXACT [OBOL:automatic]
"between brain segment of brain" EXACT [OBOL:automatic]
"biological structure of brain of between brain" EXACT [OBOL:automatic]
"biological structure of brain of diencephalon" EXACT [OBOL:automatic]
"biological structure of brain of interbrain" EXACT [OBOL:automatic]
"biological structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of between brain" EXACT [OBOL:automatic]
"brain anatomical structure of diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of interbrain" EXACT [OBOL:automatic]
"brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic]
"brain biological structure of between brain" EXACT [OBOL:automatic]
"brain biological structure of diencephalon" EXACT [OBOL:automatic]
"brain biological structure of interbrain" EXACT [OBOL:automatic]
"brain biological structure of mature diencephalon" EXACT [OBOL:automatic]
"diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"diencephalon biological structure of brain" EXACT [OBOL:automatic]
"diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"diencephalon brain biological structure" EXACT [OBOL:automatic]
"diencephalon neuraxis segment" EXACT [OBOL:automatic]
"diencephalon regional part of brain" EXACT [OBOL:automatic]
"diencephalon segment" EXACT [FMA:62005]
"diencephalon segment of brain" EXACT [OBOL:automatic]
"interbrain anatomical structure of brain" EXACT [OBOL:automatic]
"interbrain biological structure of brain" EXACT [OBOL:automatic]
"interbrain brain anatomical structure" EXACT [OBOL:automatic]
"interbrain brain biological structure" EXACT [OBOL:automatic]
"interbrain neuraxis segment" EXACT [OBOL:automatic]
"interbrain regional part of brain" EXACT [OBOL:automatic]
"interbrain segment of brain" EXACT [OBOL:automatic]
"mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"mature diencephalon biological structure of brain" EXACT [OBOL:automatic]
"mature diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"mature diencephalon brain biological structure" EXACT [OBOL:automatic]
"mature diencephalon neuraxis segment" EXACT [OBOL:automatic]
"mature diencephalon regional part of brain" EXACT [OBOL:automatic]
"mature diencephalon segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of between brain" EXACT [OBOL:automatic]
"neuraxis segment of diencephalon" EXACT [OBOL:automatic]
"neuraxis segment of interbrain" EXACT [OBOL:automatic]
"neuraxis segment of mature diencephalon" EXACT [OBOL:automatic]
"regional part of brain of between brain" EXACT [OBOL:automatic]
"regional part of brain of diencephalon" EXACT [OBOL:automatic]
"regional part of brain of interbrain" EXACT [OBOL:automatic]
"regional part of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of brain of between brain" EXACT [OBOL:automatic]
"segment of brain of diencephalon" EXACT [OBOL:automatic]
"segment of brain of interbrain" EXACT [OBOL:automatic]
"segment of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002780(regional part of forebrain)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0001897 (dorsal plus ventral thalamus),UBERON:0001899 (epithalamus),UBERON:0002757 (regional part of epithalamus),UBERON:0010225 (thalamic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002784 (regional part of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data