UBERON:0003068: Difference between revisions
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|located_in= | |located_in= | ||
|name=axial mesoderm | |name=axial mesoderm | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0000926 | |part_of=UBERON:0000922;;UBERON:0000926 | ||
Latest revision as of 17:36, 12 September 2014
| Name: | axial mesoderm | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm] | ||
| Xrefs: |
| ||
| Synonyms: | "chordamesoderm" RELATED [Wikipedia:Chordamesoderm] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:XAO_0000205-ZFA_0001204 | ||
| Subset: | uberon_slim |
Gray19_with_color.png]
200px-Gray19_with_color.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0000926(mesoderm) |
| part_of: | UBERON:0000922(embryo),UBERON:0000926(mesoderm) |
Children
| part of: | UBERON:0003063 (prechordal plate),UBERON:0004880 (chordamesoderm) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003068 (axial mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.26e-98 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_a98165caf0ee5d3e622aff4d7c9e7d28 | p@chr3:174737010..174737023, + |
| 8.26e-98 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_a98165caf0ee5d3e622aff4d7c9e7d28 | p@chr3:174737010..174737023, + |
| 3.03e-84 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_c1c1915e40e0472a0c47b082c4ed4689 | p4@PAX1 |
| 3.03e-84 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_c1c1915e40e0472a0c47b082c4ed4689 | p4@PAX1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_29a81d9675e2bea0ae24acf0372d0371 | p@chr9:33028063..33028067, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_29a81d9675e2bea0ae24acf0372d0371 | p@chr9:33028063..33028067, - |
| 5.46e-60 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_b6899922443afd6dd5e44f4911f92461 | p@chr5:30104176..30104187, - |
| 5.46e-60 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_b6899922443afd6dd5e44f4911f92461 | p@chr5:30104176..30104187, - |
| 9.77e-45 | FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_349ba244dd67367e6dd5909b7662d005 | p22@SNED1 |
| 9.77e-45 | FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_349ba244dd67367e6dd5909b7662d005 | p22@SNED1 |
| 6.64e-41 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_4b775ef5d1bcf43d3c7430f7053ab3f0 | p15@SNED1 |
| 6.64e-41 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_4b775ef5d1bcf43d3c7430f7053ab3f0 | p15@SNED1 |
| 1.31e-40 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_e9480a513f0034c5a7e6cf5b1d1b35ef | p20@CAPZB |
| 1.31e-40 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_e9480a513f0034c5a7e6cf5b1d1b35ef | p20@CAPZB |
| 1.8e-38 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_6fea0846c10bacd7eeb3614d1bfb025e | p@chr2:12248310..12248334, - |
| 1.8e-38 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_6fea0846c10bacd7eeb3614d1bfb025e | p@chr2:12248310..12248334, - |
| 2.75e-34 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_d63df439392a9f55d2a7efb5057bb4ed | p6@SIX4 |
| 2.75e-34 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_d63df439392a9f55d2a7efb5057bb4ed | p6@SIX4 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr13:51101468..51101499,-#_5d6d66677ec9ad4decff48063a0a4b20 | p1@ENST00000428276 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:88727274..88727278,+#_5d6d66677ec9ad4decff48063a0a4b20 | p@chr4:88727274..88727278, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr11:93468399..93468405,-#_5d6d66677ec9ad4decff48063a0a4b20 | p19@TAF1D, p1@SNORA40 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr13:51101468..51101499,-#_5d6d66677ec9ad4decff48063a0a4b20 | p1@ENST00000428276 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr11:93468399..93468405,-#_5d6d66677ec9ad4decff48063a0a4b20 | p19@TAF1D, p1@SNORA40 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:88727274..88727278,+#_5d6d66677ec9ad4decff48063a0a4b20 | p@chr4:88727274..88727278, + |
| 2.09e-33 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_569aadbed74fe2c486fb38a3c493ea2e | p4@NKX3-2 |
| 2.09e-33 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_569aadbed74fe2c486fb38a3c493ea2e | p4@NKX3-2 |
| 4.01e-31 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_32bc9bc272e8d896ac49caad8cd1ec1a | p19@HDAC9 |
| 4.01e-31 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_32bc9bc272e8d896ac49caad8cd1ec1a | p19@HDAC9 |
| 1.98e-30 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_5ad776d7a138be268922c2f5fe18e838 | p@chr2:241897125..241897142, - |
| 1.98e-30 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_5ad776d7a138be268922c2f5fe18e838 | p@chr2:241897125..241897142, - |
| 4.84e-30 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_3eda26a0ada7621f070e73af2781c807 | p@chr3:80727046..80727051, - |
| 4.84e-30 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_3eda26a0ada7621f070e73af2781c807 | p@chr3:80727046..80727051, - |
| 7.46e-30 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_7d7d6643cf423d834025a0cd1fc22db6 | p@chr7:158224707..158224729, - |
| 7.46e-30 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_7d7d6643cf423d834025a0cd1fc22db6 | p@chr7:158224707..158224729, - |
| 1.48e-29 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_192487e42572e02ba29f1b8ce4a0edbc | p@chr1:65888177..65888194, + |
| 1.48e-29 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_192487e42572e02ba29f1b8ce4a0edbc | p@chr1:65888177..65888194, + |
| 2.72e-28 | FFCP PHASE2:Hg19::chr14:100848311..100848321,+#_578da0c670d57b76b14e8548f83a5b2d | p5@WDR25 |
| 2.72e-28 | FFCP PHASE1:Hg19::chr14:100848311..100848321,+#_578da0c670d57b76b14e8548f83a5b2d | p5@WDR25 |
| 3.26e-27 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_2ca621fb6d8207d23743e0dbd493663a | p1@MGC27382 |
| 3.26e-27 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_2ca621fb6d8207d23743e0dbd493663a | p1@MGC27382 |
| 6.92e-27 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_33500655fd9b714400ab94da0eebd0c5 | p@chr1:19778678..19778689, - |
| 6.92e-27 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_33500655fd9b714400ab94da0eebd0c5 | p@chr1:19778678..19778689, - |
| 1.46e-26 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_ec88ac890c16c6f3129274be063cfba9 | p18@HDAC9 |
| 1.46e-26 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_ec88ac890c16c6f3129274be063cfba9 | p18@HDAC9 |
| 1.74e-26 | FFCP PHASE2:Hg19::chr4:156129991..156130013,+#_6c3c4e5917d7d78d50af5e72e7d2f49f | p2@NPY2R |
| 1.74e-26 | FFCP PHASE1:Hg19::chr4:156129991..156130013,+#_6c3c4e5917d7d78d50af5e72e7d2f49f | p2@NPY2R |
| 7.41e-26 | FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_e10006e0bd85ce1f9287ec9a3eb57993 | p@chr14:61113228..61113233, - |
| 7.41e-26 | FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_e10006e0bd85ce1f9287ec9a3eb57993 | p@chr14:61113228..61113233, - |
| 2.04e-25 | FFCP PHASE1:Hg19::chr7:27212374..27212387,-#_4df2eb2578d085143a4ed550771247b7 | p12@HOXA10 |
| 2.04e-25 | FFCP PHASE2:Hg19::chr7:27212374..27212387,-#_4df2eb2578d085143a4ed550771247b7 | p12@HOXA10 |
| 6.22e-25 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_4f91d0b8d0343f285e4d3a84114325f4 | p1@uc010aki.1 |
| 6.22e-25 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_4f91d0b8d0343f285e4d3a84114325f4 | p1@uc010aki.1 |
| 9.49e-25 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_1008ff510d1d6d8684fc38199d8d2737 | p1@PAX1 |
| 9.49e-25 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_1008ff510d1d6d8684fc38199d8d2737 | p1@PAX1 |
| 4.58e-24 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_dd6e714bd59ce129d09f94c05aef6d10 | p@chr5:140887761..140887777, + |
| 4.58e-24 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_dd6e714bd59ce129d09f94c05aef6d10 | p@chr5:140887761..140887777, + |
| 5.35e-24 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_5909306c484b63f6b2b5a2a4823bc5ec | p2@PAX1 |
| 5.35e-24 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_5909306c484b63f6b2b5a2a4823bc5ec | p2@PAX1 |
| 8.55e-24 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_83096c91855252c748196226aef1b5c3 | p16@HDAC9 |
| 8.55e-24 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_83096c91855252c748196226aef1b5c3 | p16@HDAC9 |
| 2.01e-23 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_838f6b6b2f66458d0cc34e7196e92ee7 | p4@NUP54 |
| 2.01e-23 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_838f6b6b2f66458d0cc34e7196e92ee7 | p4@NUP54 |
| 2.28e-23 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_3bea5a9b1adbf0154d311c07689aeeea | p1@NKX3-2 |
| 2.28e-23 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_3bea5a9b1adbf0154d311c07689aeeea | p1@NKX3-2 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_ec643ac9837926013bd65c064eab65e7 | p3@uc010aki.1 |
| 3.27e-23 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_ec643ac9837926013bd65c064eab65e7 | p3@uc010aki.1 |
| 1.25e-22 | FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_473f4295cdc3dcf67378324d4b320634 | p2@ENST00000413519 |
| 1.25e-22 | FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_473f4295cdc3dcf67378324d4b320634 | p2@ENST00000413519 |
| 1.46e-22 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_d6e28da0469bbd82e1f14b9f8c8ff95c | p12@CDK5RAP2 |
| 1.46e-22 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_d6e28da0469bbd82e1f14b9f8c8ff95c | p12@CDK5RAP2 |
| 9.47e-22 | FFCP PHASE1:Hg19::chr1:171076859..171076870,+#_939917d962a571d45fb91c4c65fefa4e | p@chr1:171076859..171076870, + |
| 9.47e-22 | FFCP PHASE2:Hg19::chr1:171076859..171076870,+#_939917d962a571d45fb91c4c65fefa4e | p@chr1:171076859..171076870, + |
| 1.35e-21 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_be7a20f41a381bf26db007b0dc2cf5a5 | p@chr7:100202784..100202796, - |
| 1.35e-21 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_be7a20f41a381bf26db007b0dc2cf5a5 | p@chr7:100202784..100202796, - |
| 3.83e-21 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_5e546b162597356736fbb17905b1ca87 | p4@PAX9 |
| 3.83e-21 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_5e546b162597356736fbb17905b1ca87 | p4@PAX9 |
| 4.02e-21 | FFCP PHASE2:Hg19::chr3:176765178..176765190,-#_18e360f78f683e105a70c9972ea744c7 | p@chr3:176765178..176765190, - |
| 4.02e-21 | FFCP PHASE1:Hg19::chr3:176765178..176765190,-#_18e360f78f683e105a70c9972ea744c7 | p@chr3:176765178..176765190, - |
| 4.06e-21 | FFCP PHASE2:Hg19::chr1:19810947..19810977,-#_f1c0f2b974869c9d42c880c3ea0f5589 | p17@CAPZB |
| 4.06e-21 | FFCP PHASE1:Hg19::chr1:19810947..19810977,-#_f1c0f2b974869c9d42c880c3ea0f5589 | p17@CAPZB |
| 5.43e-21 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_fbb6c8ab845b973365beaaa76e1e4dfe | p8@HOXC6 |
| 5.43e-21 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_fbb6c8ab845b973365beaaa76e1e4dfe | p8@HOXC6 |
| 4.94e-20 | FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_483260326cd5ca65ddf18b2a54568b43 | p@chr17:38613285..38613298, - |
| 4.94e-20 | FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_483260326cd5ca65ddf18b2a54568b43 | p@chr17:38613285..38613298, - |
| 9.53e-20 | FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_8c85f56bf7418130366d4c8de2445c59 | p6@WISP2 |
| 9.53e-20 | FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_8c85f56bf7418130366d4c8de2445c59 | p6@WISP2 |
| 1.46e-19 | FFCP PHASE1:Hg19::chr1:78958320..78958332,+#_4c42f6fde41d0c16c15178c37a99af3e | p2@PTGFR |
| 1.46e-19 | FFCP PHASE2:Hg19::chr1:78958320..78958332,+#_4c42f6fde41d0c16c15178c37a99af3e | p2@PTGFR |
| 2.04e-19 | FFCP PHASE2:Hg19::chr4:70707689..70707711,-#_0ed8f66bb454bf2542fe0e6359bf9a85 | p@chr4:70707689..70707711, - |
| 2.04e-19 | FFCP PHASE1:Hg19::chr4:70707689..70707711,-#_0ed8f66bb454bf2542fe0e6359bf9a85 | p@chr4:70707689..70707711, - |
| 3.75e-19 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_ac16640176f346cac32dfc60743f2592 | p1@ENST00000555639 |
| 3.75e-19 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_ac16640176f346cac32dfc60743f2592 | p1@ENST00000555639 |
| 4.68e-19 | FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_5b944c8b1a5b9d15ad1563ea33e9d28b | p1@ENST00000449986 |
| 4.68e-19 | FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_5b944c8b1a5b9d15ad1563ea33e9d28b | p1@ENST00000449986 |
| 1.04e-18 | FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_3059e886734072103aee0784e9f586b5 | p3@LXN |
| 1.04e-18 | FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_3059e886734072103aee0784e9f586b5 | p3@LXN |
| 5.12e-18 | FFCP PHASE1:Hg19::chr6:112375300..112375334,+#_aa6366ebe7ea8bf2cf2a7290ffc17cb2 | p1@WISP3 |
| 5.12e-18 | FFCP PHASE2:Hg19::chr6:112375300..112375334,+#_aa6366ebe7ea8bf2cf2a7290ffc17cb2 | p1@WISP3 |
| 9.14e-18 | FFCP PHASE2:Hg19::chr8:77595678..77595688,+#_ca7de249b4db1c51a39fbdcc9217808e | p9@ZFHX4 |
| 9.14e-18 | FFCP PHASE1:Hg19::chr8:77595678..77595688,+#_ca7de249b4db1c51a39fbdcc9217808e | p9@ZFHX4 |
