UBERON:0003082: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
|alt_id=UBERON:XAO_0000315-ZFA_0001056 | |alt_id=UBERON:XAO_0000315-ZFA_0001056 | ||
| | |comment=Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class. | ||
|created_by= | |created_by= | ||
| | |def="A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0002329 | |develops_from=UBERON:0002329;;UBERON:0004290 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003082 | |||
|is_a=UBERON:0017650 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
| | |name=myotome | ||
| | |namespace=FANTOM | ||
| | |obo_creation_date= | ||
|part_of=UBERON:0000926 | |||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="muscle plate" RELATED [];;"myomere" RELATED [];;"myotome region" RELATED [];;"myotomes" RELATED [];;"myotomus" RELATED LATIN [Wikipedia:Myotome] | |||
|union_of= | |||
|xref=AAO:0011067;;BTO:0000742;;EHDAA2:0003431;;EHDAA:1721;;EHDAA:1727;;EHDAA:1733;;EHDAA:1739;;http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png;;ncithesaurus:Myotome_Region;;SCTID:344535001;;TAO:0001056;;VHOG:0001244;;XAO:0000315;;ZFA:0001056 | |||
}} | }} |
Latest revision as of 17:37, 12 September 2014
Name: | myotome | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator] | |
Xrefs: |
| |
Synonyms: |
"muscle plate" RELATED [] "myomere" RELATED [] "myotome region" RELATED [] "myotomes" RELATED [] "myotomus" RELATED LATIN [Wikipedia:Myotome] | |
Comments: | Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class. | |
Alt_id: | UBERON:XAO_0000315-ZFA_0001056 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0017650(developing mesenchymal structure) |
---|---|
develops_from: | UBERON:0002329(somite),UBERON:0004290(dermomyotome) |
part_of: | UBERON:0000926(mesoderm) |
Children
develops from: | UBERON:0001134 (skeletal muscle tissue),UBERON:0014892 (skeletal muscle organ) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003082 (myotome), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.