Personal tools

UBERON:0003082: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003082
|name=myotome
|namespace=
|def="A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
|xref=AAO:0011067;;BTO:0000742;;EHDAA:1721;;EHDAA:1727;;EHDAA:1733;;EHDAA:1739;;EHDAA2:0003431;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png;;ncithesaurus:Myotome_Region;;SCTID:344535001;;TAO:0001056;;VHOG:0001244;;XAO:0000315;;ZFA:0001056
|is_a=UBERON:0000490;;UBERON:0004120;;UBERON:0005291
|synonym="myomeres" RELATED [];;"myotome region" RELATED [];;"myotomes" RELATED []
|comment=The term "myotome" is also used to describe the muscles served by a single nerve root
|alt_id=UBERON:XAO_0000315-ZFA_0001056
|alt_id=UBERON:XAO_0000315-ZFA_0001056
|disjoint_from=
|comment=Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0002329
|develops_from=UBERON:0002329;;UBERON:0004290
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003082
|is_a=UBERON:0017650
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000926;;UBERON:0004290
|name=myotome
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0000926
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="muscle plate" RELATED [];;"myomere" RELATED [];;"myotome region" RELATED [];;"myotomes" RELATED [];;"myotomus" RELATED LATIN [Wikipedia:Myotome]
|union_of=
|xref=AAO:0011067;;BTO:0000742;;EHDAA2:0003431;;EHDAA:1721;;EHDAA:1727;;EHDAA:1733;;EHDAA:1739;;http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png;;ncithesaurus:Myotome_Region;;SCTID:344535001;;TAO:0001056;;VHOG:0001244;;XAO:0000315;;ZFA:0001056
}}
}}

Latest revision as of 17:37, 12 September 2014

Name:myotome
Namespace:FANTOM
Definition:"A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
Xrefs:
links:

AAO:0011067
BTO:0000742
EHDAA2:0003431
EHDAA:1721
EHDAA:1727
EHDAA:1733
EHDAA:1739
[ Gray65.png Gray65.png]
[ 200px-Gray65.png 200px-Gray65.png]
ncithesaurus:Myotome_Region
SCTID:344535001
TAO:0001056
VHOG:0001244
XAO:0000315

ZFA:0001056
Synonyms: "muscle plate" RELATED []
"myomere" RELATED []
"myotome region" RELATED []
"myotomes" RELATED []
"myotomus" RELATED LATIN [Wikipedia:Myotome]
Comments:Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
Alt_id: UBERON:XAO_0000315-ZFA_0001056
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0017650(developing mesenchymal structure)
develops_from:UBERON:0002329(somite),UBERON:0004290(dermomyotome)
part_of:UBERON:0000926(mesoderm)



Children

develops from:UBERON:0001134 (skeletal muscle tissue),UBERON:0014892 (skeletal muscle organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003082 (myotome), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.