UBERON:0003104: Difference between revisions
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{{UBERON | {{UBERON | ||
|alt_id=UBERON:XAO_0003046-ZFA_0000393 | |alt_id=UBERON:XAO_0003046-ZFA_0000393 | ||
| | |comment=Editors notes: the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003104 | |||
|is_a=UBERON:0000479 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=mesenchyme | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0009142 | |part_of=UBERON:0009142 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage.[AAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="mesenchyma" RELATED LATIN [Wikipedia:Mesenchyme];;"mesenchymal tissue" EXACT [];;"mesenchyme tissue" EXACT [];;"portion of mesenchymal tissue" EXACT [];;"portion of mesenchyme tissue" EXACT [] | |||
|union_of= | |||
|xref=AAO:0010427;;AEO:0000145;;BTO:0001393;;EHDAA2:0003145;;EV:0100007;;http://upload.wikimedia.org/wikipedia/commons/f/f4/Mesenchymal_Stem_Cell.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Mesenchymal_Stem_Cell.jpg/200px-Mesenchymal_Stem_Cell.jpg;;ncithesaurus:Mesenchyme;;TAO:0000393;;VHOG:0000170;;XAO:0003046;;ZFA:0000393 | |||
}} | }} |
Latest revision as of 17:38, 12 September 2014
Name: | mesenchyme | |
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Namespace: | FANTOM | |
Definition: | "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator] | |
Xrefs: |
| |
Synonyms: |
"mesenchyma" RELATED LATIN [Wikipedia:Mesenchyme] "mesenchymal tissue" EXACT [] "mesenchyme tissue" EXACT [] "portion of mesenchymal tissue" EXACT [] "portion of mesenchyme tissue" EXACT [] | |
Comments: | Editors notes: the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense | |
Alt_id: | UBERON:XAO_0003046-ZFA_0000393 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000479(tissue) |
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part_of: | UBERON:0009142(entire embryonic mesenchyme) |
Children
is a: | UBERON:0003422 (mesenchyme of umbilical cord),UBERON:0003918 (kidney mesenchyme),UBERON:0004161 (septum transversum),UBERON:0004208 (nephrogenic mesenchyme),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme),UBERON:0006258 (lateral plate mesenchyme),UBERON:0006293 (spleen primordium),UBERON:0007524 (dense mesenchyme tissue),UBERON:0007530 (migrating mesenchyme population),UBERON:0009526 (maxillary process mesenchyme),UBERON:0009749 (limb mesenchyme),UBERON:0009751 (cardiac mesenchyme),UBERON:0009891 (facial mesenchyme),UBERON:0010083 (future dermis),UBERON:0014387 (mesenchyme derived from neural crest) |
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develops from: | UBERON:0001046 (hindgut),UBERON:0002514 (intramembranous bone) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003104 (mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.