UBERON:0003133: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=GO uses genitalia for the singular organ | |comment=GO uses genitalia for the singular organ | ||
|created_by= | |created_by= | ||
| | |def="An organ involved in reproduction" [UBERON:xp] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003133 | |||
|is_a=UBERON:0000062 ;;UBERON:0005156 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=reproductive organ | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000990 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=functional_classification;;organ_slim | ||
| | |synonym="genital organ" EXACT [];;"genitalia" RELATED PLURAL [];;"reproductive system organ" EXACT [];;"sex organ" EXACT [] | ||
|union_of= | |||
|xref=EMAPA:17381;;MA:0001752;;MESH:A.05.360;;ncithesaurus:Genitalia;;OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA;;SCTID:128181006;;TGMA:0000591;;WBbt:0008422 | |||
}} | }} | ||
Latest revision as of 17:38, 12 September 2014
| Name: | reproductive organ | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "An organ involved in reproduction" [UBERON:xp] | |
| Xrefs: |
| |
| Synonyms: |
"genital organ" EXACT [] "genitalia" RELATED PLURAL [] "reproductive system organ" EXACT [] "sex organ" EXACT [] | |
| Comments: | GO uses genitalia for the singular organ | |
| Subset: |
functional_classification organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ),UBERON:0005156(reproductive structure) |
|---|---|
| part_of: | UBERON:0000990(reproductive system) |
Children
| is a: | UBERON:0000991 (gonad),UBERON:0003134 (female reproductive organ),UBERON:0003135 (male reproductive organ),UBERON:0004175 (internal genitalia),UBERON:0004176 (external genitalia) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10100-102D1 (uterus, adult, pool1)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10200-103F2 (penis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10204-103F6 (vagina, adult)
... further results Mouse (Mus musculus)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10100-102D1 (uterus, adult, pool1)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10200-103F2 (penis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10204-103F6 (vagina, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003133 (reproductive organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
