UBERON:0003544: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003544 | |||
|is_a=UBERON:0002316 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=brain white matter | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000955 | |part_of=UBERON:0000955 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="brain white matter of neuraxis" EXACT [OBOL:automatic];;"brain white substance" EXACT [OBOL:automatic];;"white matter of brain" EXACT [OBOL:automatic];;"white matter of neuraxis of brain" EXACT [OBOL:automatic];;"white substance of brain" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=MA:0000820;;ncithesaurus:Brain_White_Matter | |||
}} | }} |
Latest revision as of 17:40, 12 September 2014
Name: | brain white matter | |
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Namespace: | FANTOM | |
Definition: | "the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] | |
Xrefs: |
| |
Synonyms: |
"brain white matter of neuraxis" EXACT [OBOL:automatic] "brain white substance" EXACT [OBOL:automatic] "white matter of brain" EXACT [OBOL:automatic] "white matter of neuraxis of brain" EXACT [OBOL:automatic] "white substance of brain" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002316(white matter) |
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part_of: | UBERON:0000955(brain) |
Children
is a: | UBERON:0011299 (white matter of telencephalon) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10042-101F6 (corpus callosum, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003544 (brain white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data