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{{UBERON
{{UBERON
|id=UBERON:0003544
|alt_id=
|name=brain white matter
|namespace=
|def="the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
|xref=MA:0000820;;ncithesaurus:Brain_White_Matter
|is_a=UBERON:0002316
|synonym="brain white matter of neuraxis" EXACT [OBOL:automatic];;"brain white substance" EXACT [OBOL:automatic];;"white matter of brain" EXACT [OBOL:automatic];;"white matter of neuraxis of brain" EXACT [OBOL:automatic];;"white substance of brain" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003544
|is_a=UBERON:0002316
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=brain white matter
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000955
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="brain white matter of neuraxis" EXACT [OBOL:automatic];;"brain white substance" EXACT [OBOL:automatic];;"white matter of brain" EXACT [OBOL:automatic];;"white matter of neuraxis of brain" EXACT [OBOL:automatic];;"white substance of brain" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000820;;ncithesaurus:Brain_White_Matter
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:brain white matter
Namespace:FANTOM
Definition:"the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
Xrefs:
links:

MA:0000820

ncithesaurus:Brain_White_Matter
Synonyms: "brain white matter of neuraxis" EXACT [OBOL:automatic]
"brain white substance" EXACT [OBOL:automatic]
"white matter of brain" EXACT [OBOL:automatic]
"white matter of neuraxis of brain" EXACT [OBOL:automatic]
"white substance of brain" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002316(white matter)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0011299 (white matter of telencephalon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003544 (brain white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data