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{{UBERON
{{UBERON
|id=UBERON:0003714
|alt_id=
|name=neural tissue
|namespace=
|def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009
|is_a=UBERON:0000073;;UBERON:0000479
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642]
|comment=FMA definition includes vasculature
|comment=FMA definition includes vasculature
|alt_id=
|disjoint_from=UBERON:0004755
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0004755
|has_quality=
|has_quality=
|id=UBERON:0003714
|is_a=UBERON:0000479
|is_obsolete=
|located_in=
|located_in=
|name=neural tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001016
|part_of=UBERON:0001016
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string
|subset=
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642]
|union_of=
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:neural tissue
Namespace:FANTOM
Definition:"Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
Xrefs:
links:

AAO:0000325
AEO:0000123
EHDAA2:0003123
FMA:9642
GAID:609
MESH:A.08.561
ncithesaurus:Nervous_Tissue
OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ

SCTID:91728009
Synonyms: "nerve tissue" EXACT [FMA:9642]
"nervous tissue" EXACT [FMA:9642]
"portion of neural tissue" EXACT [FMA:9642]
Comments:FMA definition includes vasculature

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue)
disjoint_from:UBERON:0004755(skeletal tissue)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0000045 (ganglion),UBERON:0001810 (nerve plexus)
disjoint from:UBERON:0001013 (adipose tissue),UBERON:0002385 (muscle tissue)
derives from:FF:0102912 (neuroepithelioma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003714 (neural tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-130FFCP PHASE1:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.75e-130FFCP PHASE2:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.55e-98FFCP PHASE2:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
1.55e-98FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
1.55e-98FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
1.55e-98FFCP PHASE1:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
5.22e-79FFCP PHASE2:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
5.22e-79FFCP PHASE1:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
2.03e-66FFCP PHASE1:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.03e-66FFCP PHASE2:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.84e-66FFCP PHASE2:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
2.84e-66FFCP PHASE1:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
7.73e-66FFCP PHASE2:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
7.73e-66FFCP PHASE1:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
2.0e-56FFCP PHASE2:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.0e-56FFCP PHASE1:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.74e-50FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
2.74e-50FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE2:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE2:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE1:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE2:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
2.74e-50FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
2.74e-50FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
2.74e-50FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE1:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
2.74e-50FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
4.52e-50FFCP PHASE1:Hg19::chr2:192696669..192696673,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:192696669..192696673, +
4.52e-50FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:134472430..134472432, +
4.52e-50FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:172318159..172318160, +
4.52e-50FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:39827273..39827281, +
4.52e-50FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr4:188536760..188536764, -
4.52e-50FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr21:22483836..22483880, +
4.52e-50FFCP PHASE1:Hg19::chr12:69678255..69678259,+#_9b72837bdb72ff9efe1143abbdbacba2p1@ENST00000548895
4.52e-50FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:58471631..58471634, +
4.52e-50FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_9b72837bdb72ff9efe1143abbdbacba2p10@PPAP2A
4.52e-50FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr19:20382476..20382481, -
4.52e-50FFCP PHASE2:Hg19::chrX:52006984..52006993,+#_9b72837bdb72ff9efe1143abbdbacba2p@chrX:52006984..52006993, +
4.52e-50FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr21:45724075..45724081, +
4.52e-50FFCP PHASE1:Hg19::chr2:21277180..21277193,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:21277180..21277193, +
4.52e-50FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:51174920..51174928, -
4.52e-50FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr17:47107522..47107524, +
4.52e-50FFCP PHASE2:Hg19::chr12:45444635..45444645,-#_9b72837bdb72ff9efe1143abbdbacba2p2@AB463567
4.52e-50FFCP PHASE2:Hg19::chr8:27041770..27041779,+#_9b72837bdb72ff9efe1143abbdbacba2p4@ENST00000521408
4.52e-50FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:133035182..133035195, -
4.52e-50FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:90420477..90420478, -
4.52e-50FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr19:35978717..35978722, -
4.52e-50FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:90420477..90420478, -
4.52e-50FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr21:45724075..45724081, +
4.52e-50FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_9b72837bdb72ff9efe1143abbdbacba2p41@NAV3
4.52e-50FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_9b72837bdb72ff9efe1143abbdbacba2p@chrX:25873187..25873209, +
4.52e-50FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:218214846..218214850, -
4.52e-50FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_9b72837bdb72ff9efe1143abbdbacba2p@chrX:131884370..131884375, -
4.52e-50FFCP PHASE1:Hg19::chr6:21203484..21203485,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:21203484..21203485, +
4.52e-50FFCP PHASE2:Hg19::chr2:242808350..242808356,+#_9b72837bdb72ff9efe1143abbdbacba2p2@LOC100131763
4.52e-50FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_9b72837bdb72ff9efe1143abbdbacba2p22@SOX2-OT
4.52e-50FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr22:30951607..30951613, -
4.52e-50FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr4:188536760..188536764, -
4.52e-50FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:68527802..68527806, +
4.52e-50FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:95704857..95704906, +
4.52e-50FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_9b72837bdb72ff9efe1143abbdbacba2p10@PPAP2A
4.52e-50FFCP PHASE2:Hg19::chr2:192696669..192696673,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:192696669..192696673, +
4.52e-50FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:134472430..134472432, +
4.52e-50FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:133945378..133945386, +
4.52e-50FFCP PHASE2:Hg19::chr2:21277180..21277193,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:21277180..21277193, +
4.52e-50FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr4:139590958..139590961, -
4.52e-50FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_9b72837bdb72ff9efe1143abbdbacba2p3@ENST00000558781
4.52e-50FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:121951983..121951986, +
4.52e-50FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr19:20382476..20382481, -
4.52e-50FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_9b72837bdb72ff9efe1143abbdbacba2p9@TCF25
4.52e-50FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:133945378..133945386, +
4.52e-50FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr4:139590958..139590961, -
4.52e-50FFCP PHASE1:Hg19::chr12:296753..296755,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr12:296753..296755, -
4.52e-50FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:22000519..22000525, -
4.52e-50FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:163246025..163246029, +
4.52e-50FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr12:68567714..68567717, +
4.52e-50FFCP PHASE2:Hg19::chr6:21203484..21203485,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:21203484..21203485, +
4.52e-50FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_9b72837bdb72ff9efe1143abbdbacba2p22@SOX2-OT
4.52e-50FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_9b72837bdb72ff9efe1143abbdbacba2p59@ANK3
4.52e-50FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr18:45498690..45498695, -
4.52e-50FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_9b72837bdb72ff9efe1143abbdbacba2p@chrX:25873187..25873209, +
4.52e-50FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:126163123..126163134, +
4.52e-50FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:77789390..77789399, -
4.52e-50FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:85119696..85119699, +
4.52e-50FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_9b72837bdb72ff9efe1143abbdbacba2p12@C16orf62










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003714&oldid=3277581"