UBERON:0004016: Difference between revisions

Latest revision as of 17:42, 12 September 2014

dermatome

Namespace:

FANTOM

Definition:

"the mesoderm that is derived from the somite that is fated to become the dermis[MP]" [MP:0003940, Wikipedia:Dermatomal_mesenchyme]

Xrefs:

Expandlinks:

Synonyms:

"cutis plate" EXACT [Wikipedia:Cutis_plate]
"dermatomal mesenchyme" EXACT [Wikipedia:Cutis_plate]
"mesenchyma dermatomiale" RELATED LATIN [Wikipedia:Dermatomal_mesenchyme]

Comments:

Not to be confused with 'dermatome segment of skin'.

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0017650(developing mesenchymal structure)
develops_from:	UBERON:0002329(somite),UBERON:0004290(dermomyotome)
part_of:	UBERON:0000926(mesoderm)

Children

develops from:	UBERON:0002067 (dermis),UBERON:0010083 (future dermis)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004016 (dermatome), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
1.31e-68	FFCP PHASE2:Hg19::chr1:45087872..45087892,+	p@chr1:45087872..45087892, +
1.31e-68	FFCP PHASE1:Hg19::chr1:45087872..45087892,+	p@chr1:45087872..45087892, +
9.25e-50	FFCP PHASE1:Hg19::chr7:107707064..107707079,-	p@chr7:107707064..107707079, -
9.25e-50	FFCP PHASE2:Hg19::chr7:107707064..107707079,-	p@chr7:107707064..107707079, -
9.25e-50	FFCP PHASE1:Hg19::chr7:107707083..107707099,-	p@chr7:107707083..107707099, -
9.25e-50	FFCP PHASE2:Hg19::chr7:107707083..107707099,-	p@chr7:107707083..107707099, -
9.89e-40	FFCP PHASE2:Hg19::chr10:124254447..124254458,-	p@chr10:124254447..124254458, -
9.89e-40	FFCP PHASE1:Hg19::chr10:124254447..124254458,-	p@chr10:124254447..124254458, -
1.21e-39	FFCP PHASE1:Hg19::chr1:10228206..10228218,+	p@chr1:10228206..10228218, +
1.21e-39	FFCP PHASE2:Hg19::chr1:10228206..10228218,+	p@chr1:10228206..10228218, +
5.08e-38	FFCP PHASE1:Hg19::chr6:5498703..5498727,+	p@chr6:5498703..5498727, +
5.08e-38	FFCP PHASE2:Hg19::chr6:5498703..5498727,+	p@chr6:5498703..5498727, +
2.83e-35	FFCP PHASE1:Hg19::chr8:128387795..128387801,+	p@chr8:128387795..128387801, +
2.83e-35	FFCP PHASE2:Hg19::chr8:128387795..128387801,+	p@chr8:128387795..128387801, +
1.55e-33	FFCP PHASE1:Hg19::chr1:45088343..45088354,+	p@chr1:45088343..45088354, +
1.55e-33	FFCP PHASE2:Hg19::chr1:45088343..45088354,+	p@chr1:45088343..45088354, +
5.64e-29	FFCP PHASE2:Hg19::chr7:98258032..98258045,+	p@chr7:98258032..98258045, +
5.64e-29	FFCP PHASE1:Hg19::chr7:98258032..98258045,+	p@chr7:98258032..98258045, +
7.57e-28	FFCP PHASE2:Hg19::chr10:31071229..31071236,+	p@chr10:31071229..31071236, +
7.57e-28	FFCP PHASE1:Hg19::chr10:31071229..31071236,+	p@chr10:31071229..31071236, +
1.12e-26	FFCP PHASE1:Hg19::chr5:33794920..33794939,-	p@chr5:33794920..33794939, -
1.12e-26	FFCP PHASE2:Hg19::chr5:33794920..33794939,-	p@chr5:33794920..33794939, -
1.47e-26	FFCP PHASE2:Hg19::chr21:47405899..47405911,+	p@chr21:47405899..47405911, +
1.47e-26	FFCP PHASE1:Hg19::chr21:47405899..47405911,+	p@chr21:47405899..47405911, +
1.5e-25	FFCP PHASE2:Hg19::chr4:89454373..89454379,-	p@chr4:89454373..89454379, -
1.5e-25	FFCP PHASE2:Hg19::chr17:38174999..38175001,+	p8@CASC3
1.5e-25	FFCP PHASE1:Hg19::chr4:89454373..89454379,-	p@chr4:89454373..89454379, -
1.5e-25	FFCP PHASE1:Hg19::chr17:38174999..38175001,+	p8@CASC3
2.99e-25	FFCP PHASE2:Hg19::chr8:141656896..141656918,-	p@chr8:141656896..141656918, -
2.99e-25	FFCP PHASE1:Hg19::chr8:141656896..141656918,-	p@chr8:141656896..141656918, -
3.17e-25	FFCP PHASE1:Hg19::chr2:95983133..95983144,+	p@chr2:95983133..95983144, +
3.17e-25	FFCP PHASE2:Hg19::chr2:95983133..95983144,+	p@chr2:95983133..95983144, +
2.03e-24	FFCP PHASE1:Hg19::chr5:33794876..33794902,-	p@chr5:33794876..33794902, -
2.03e-24	FFCP PHASE2:Hg19::chr5:33794876..33794902,-	p@chr5:33794876..33794902, -
2.4e-24	FFCP PHASE2:Hg19::chr5:174252830..174252847,+	p@chr5:174252830..174252847, +
2.4e-24	FFCP PHASE1:Hg19::chr5:174252830..174252847,+	p@chr5:174252830..174252847, +
2.92e-24	FFCP PHASE2:Hg19::chr4:127699583..127699608,-	p@chr4:127699583..127699608, -
2.92e-24	FFCP PHASE1:Hg19::chr4:127699583..127699608,-	p@chr4:127699583..127699608, -
1.68e-23	FFCP PHASE1:Hg19::chr4:127876558..127876592,-	p1@ENST00000515428
1.68e-23	FFCP PHASE2:Hg19::chr4:127876558..127876592,-	p1@ENST00000515428
2.62e-23	FFCP PHASE1:Hg19::chr7:127963997..127964004,-	p@chr7:127963997..127964004, -
2.62e-23	FFCP PHASE2:Hg19::chr7:127963997..127964004,-	p@chr7:127963997..127964004, -
3.32e-23	FFCP PHASE2:Hg19::chr17:813116..813132,+	p@chr17:813116..813132, +
3.32e-23	FFCP PHASE1:Hg19::chr17:813116..813132,+	p@chr17:813116..813132, +
6.41e-23	FFCP PHASE2:Hg19::chr16:85617034..85617043,-	p@chr16:85617034..85617043, -
6.41e-23	FFCP PHASE1:Hg19::chr16:85617034..85617043,-	p@chr16:85617034..85617043, -
7.17e-23	FFCP PHASE1:Hg19::chr5:177652352..177652356,-	p6@AGXT2L2
7.17e-23	FFCP PHASE2:Hg19::chr5:177652352..177652356,-	p6@AGXT2L2
7.17e-23	FFCP PHASE2:Hg19::chr5:174252850..174252859,+	p@chr5:174252850..174252859, +
7.17e-23	FFCP PHASE1:Hg19::chr5:174252850..174252859,+	p@chr5:174252850..174252859, +
4.19e-22	FFCP PHASE1:Hg19::chr5:33794904..33794916,-	p@chr5:33794904..33794916, -
4.19e-22	FFCP PHASE2:Hg19::chr5:33794904..33794916,-	p@chr5:33794904..33794916, -
3.14e-21	FFCP PHASE2:Hg19::chr11:122051600..122051617,+	p@chr11:122051600..122051617, +
3.14e-21	FFCP PHASE1:Hg19::chr11:122051600..122051617,+	p@chr11:122051600..122051617, +
7.71e-21	FFCP PHASE2:Hg19::chr21:36208749..36208768,+	p@chr21:36208749..36208768, +
7.71e-21	FFCP PHASE1:Hg19::chr21:36208749..36208768,+	p@chr21:36208749..36208768, +
8.88e-21	FFCP PHASE2:Hg19::chr20:940152..940156,-	p@chr20:940152..940156, -
8.88e-21	FFCP PHASE1:Hg19::chr20:940152..940156,-	p@chr20:940152..940156, -
9.8e-21	FFCP PHASE2:Hg19::chr18:52969844..52969895,-	p27@TCF4
9.8e-21	FFCP PHASE1:Hg19::chr18:52969844..52969895,-	p27@TCF4
1.24e-20	FFCP PHASE2:Hg19::chr1:45087902..45087912,+	p@chr1:45087902..45087912, +
1.24e-20	FFCP PHASE1:Hg19::chr1:45087902..45087912,+	p@chr1:45087902..45087912, +
1.29e-20	FFCP PHASE1:Hg19::chr12:66036219..66036262,-	p1@ENST00000544557
1.29e-20	FFCP PHASE2:Hg19::chr12:66036219..66036262,-	p1@ENST00000544557
1.32e-20	FFCP PHASE1:Hg19::chr7:152549181..152549213,+	p@chr7:152549181..152549213, +
1.32e-20	FFCP PHASE2:Hg19::chr7:152549181..152549213,+	p@chr7:152549181..152549213, +
1.73e-20	FFCP PHASE1:Hg19::chr1:119530682..119530692,-	p10@TBX15
1.73e-20	FFCP PHASE2:Hg19::chr1:119530682..119530692,-	p10@TBX15
2.11e-20	FFCP PHASE2:Hg19::chr17:73682761..73682766,+	p@chr17:73682761..73682766, +
2.11e-20	FFCP PHASE1:Hg19::chr17:73682761..73682766,+	p@chr17:73682761..73682766, +
4.35e-19	FFCP PHASE1:Hg19::chr14:38371323..38371347,-	p1@ENST00000554257, p1@uc001wuk.1
4.35e-19	FFCP PHASE2:Hg19::chr14:38371323..38371347,-	p1@ENST00000554257, p1@uc001wuk.1
4.67e-19	FFCP PHASE2:Hg19::chr21:47404148..47404163,+	p@chr21:47404148..47404163, +
4.67e-19	FFCP PHASE1:Hg19::chr21:47404148..47404163,+	p@chr21:47404148..47404163, +
5.29e-19	FFCP PHASE2:Hg19::chr4:5754385..5754405,+	p3@EVC
5.29e-19	FFCP PHASE1:Hg19::chr4:5754385..5754405,+	p3@EVC
1.22e-18	FFCP PHASE1:Hg19::chr2:177022022..177022060,+	p@chr2:177022022..177022060, +
1.22e-18	FFCP PHASE2:Hg19::chr2:177022022..177022060,+	p@chr2:177022022..177022060, +
1.35e-18	FFCP PHASE2:Hg19::chr12:2163623..2163634,+	p@chr12:2163623..2163634, +
1.35e-18	FFCP PHASE1:Hg19::chr12:5198401..5198415,+	p@chr12:5198401..5198415, +
1.35e-18	FFCP PHASE2:Hg19::chr12:5198401..5198415,+	p@chr12:5198401..5198415, +
1.35e-18	FFCP PHASE1:Hg19::chr12:2163623..2163634,+	p@chr12:2163623..2163634, +
1.51e-17	FFCP PHASE1:Hg19::chr2:201474023..201474035,+	p5@AOX1
1.51e-17	FFCP PHASE2:Hg19::chr2:201474023..201474035,+	p5@AOX1
3.53e-17	FFCP PHASE1:Hg19::chr12:66036083..66036098,-	p3@ENST00000539653
3.53e-17	FFCP PHASE2:Hg19::chr12:66036083..66036098,-	p3@ENST00000539653
4.17e-17	FFCP PHASE2:Hg19::chrX:118362928..118362933,+	p@chrX:118362928..118362933, +
4.17e-17	FFCP PHASE1:Hg19::chrX:118362928..118362933,+	p@chrX:118362928..118362933, +
4.92e-17	FFCP PHASE2:Hg19::chr4:81159520..81159523,+	p@chr4:81159520..81159523, +
4.92e-17	FFCP PHASE1:Hg19::chr4:81159520..81159523,+	p@chr4:81159520..81159523, +
7.89e-17	FFCP PHASE1:Hg19::chr2:177502906..177502920,-	p2@ENST00000295549, p2@uc002ukz.1
7.89e-17	FFCP PHASE2:Hg19::chr2:177502906..177502920,-	p2@ENST00000295549, p2@uc002ukz.1
8.61e-17	FFCP PHASE2:Hg19::chr1:85987126..85987173,-	p@chr1:85987126..85987173, -
8.61e-17	FFCP PHASE1:Hg19::chr1:85987126..85987173,-	p@chr1:85987126..85987173, -
8.66e-17	FFCP PHASE2:Hg19::chr3:139000423..139000454,+	p3@MRPS22
8.66e-17	FFCP PHASE1:Hg19::chr3:139000423..139000454,+	p3@MRPS22
9.03e-17	FFCP PHASE2:Hg19::chr17:46627545..46627560,+	p@chr17:46627545..46627560, +
9.03e-17	FFCP PHASE1:Hg19::chr17:46627545..46627560,+	p@chr17:46627545..46627560, +
1.05e-16	FFCP PHASE2:Hg19::chr20:4451008..4451026,-	p@chr20:4451008..4451026, -
1.05e-16	FFCP PHASE1:Hg19::chr20:4451008..4451026,-	p@chr20:4451008..4451026, -

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{UBERON
-|id=UBERON:0004016
-|name=dermatome
-|namespace=
-|def="the mesoderm that is derived from the somite that is fated to become the dermis[MP]" [MP:0003940, Wikipedia:Cutis_plate]
-|xref=AAO:0011028;;EHDAA:1719;;EHDAA:1725;;EHDAA:1731;;EHDAA:1737;;EHDAA2:0003428;;ncithesaurus:Dermatome;;SCTID:244023005;;XAO:0000220
-|is_a=UBERON:0000479;;UBERON:0004120;;UBERON:0005291
-|synonym="Cutis plate" EXACT [Wikipedia:Cutis_plate]
-|comment=
 |alt_id=
-|disjoint_from=
+|comment=Not to be confused with 'dermatome segment of skin'.
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="the mesoderm that is derived from the somite that is fated to become the dermis[MP]" [MP:0003940, Wikipedia:Dermatomal_mesenchyme]
-|subset=
-|adjacent_to=
 |derives_from=
-|develops_from=UBERON:0002329
+|develops_from=UBERON:0002329;;UBERON:0004290
+|disjoint_from=
 |has_quality=
+|id=UBERON:0004016
+|is_a=UBERON:0017650
+|is_obsolete=
 |located_in=
-|part_of=UBERON:0000926;;UBERON:0004290
+|name=dermatome
+|namespace=FANTOM
+|obo_creation_date=
+|part_of=UBERON:0000926
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
-|is_obsolete=
+|subset=
-|preceded_by=
+|synonym="cutis plate" EXACT [Wikipedia:Cutis_plate];;"dermatomal mesenchyme" EXACT [Wikipedia:Cutis_plate];;"mesenchyma dermatomiale" RELATED LATIN [Wikipedia:Dermatomal_mesenchyme]
+|union_of=
+|xref=AAO:0011028;;EHDAA2:0003428;;EHDAA:1719;;EHDAA:1725;;EHDAA:1731;;EHDAA:1737;;http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png;;ncithesaurus:Dermatome;;XAO:0000220
 }}

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UBERON:0004016: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:42, 12 September 2014

Ontology Tree: Loaded from BioPortal

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