UBERON:0004141: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=heart tube | |name=heart tube | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
Latest revision as of 17:44, 12 September 2014
| Name: | heart tube | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143, ZFA:0000360] | ||
| Xrefs: |
| ||
| Synonyms: |
"early primitive heart tube" EXACT [EMAPA:16208] "embryonic heart tube" RELATED [] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003914(epithelial tube),UBERON:0005291(embryonic tissue),UBERON:0012275(meso-epithelium) |
|---|---|
| develops_from: | UBERON:0005498(primitive heart tube) |
| part_of: | UBERON:0000922(embryo) |
Children
| develops from: | UBERON:0000948 (heart) |
|---|---|
| part of: | UBERON:0006283 (future cardiac ventricle),UBERON:0010226 (future cardiac ventricle),UBERON:0010227 (future cardiac atrium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004141 (heart tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.09e-81 | FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_dbbfb5dc1ff2364b7bef8466b67e5940 | p@chr4:147375434..147375447, + |
| 1.09e-81 | FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_dbbfb5dc1ff2364b7bef8466b67e5940 | p@chr9:24549775..24549776, - |
| 1.09e-81 | FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_dbbfb5dc1ff2364b7bef8466b67e5940 | p@chr1:137747392..137747402, - |
| 1.09e-81 | FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_dbbfb5dc1ff2364b7bef8466b67e5940 | p@chr4:147375434..147375447, + |
| 1.09e-81 | FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_dbbfb5dc1ff2364b7bef8466b67e5940 | p@chr1:137747392..137747402, - |
| 1.09e-81 | FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_dbbfb5dc1ff2364b7bef8466b67e5940 | p@chr9:24549775..24549776, - |
| 1.88e-78 | FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_0ed58d421a7e999844aaae24104db453 | p@chr4:140980456..140980463, + |
| 1.88e-78 | FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_0ed58d421a7e999844aaae24104db453 | p@chr4:140980456..140980463, + |
| 1.92e-77 | FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_97a439514a9abe67ba2b3e26e17ca91a | p@chr12:113728951..113728965, + |
| 1.92e-77 | FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_97a439514a9abe67ba2b3e26e17ca91a | p@chr12:113728951..113728965, + |
| 1.92e-77 | FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_97a439514a9abe67ba2b3e26e17ca91a | p@chr1:137737483..137737497, - |
| 1.92e-77 | FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_97a439514a9abe67ba2b3e26e17ca91a | p@chr1:137737483..137737497, - |
| 2.14e-77 | FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_54213787fcc7dfd9e16b44c839e9b02d | p@chr4:147375200..147375220, + |
| 2.14e-77 | FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_54213787fcc7dfd9e16b44c839e9b02d | p@chr19:36187511..36187515, - |
| 2.14e-77 | FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_54213787fcc7dfd9e16b44c839e9b02d | p@chr19:36187511..36187515, - |
| 2.14e-77 | FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_54213787fcc7dfd9e16b44c839e9b02d | p@chr4:147375200..147375220, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744550..137744565, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_0730087416efc6b69ab7253f0e46f896 | p@chr5:120286706..120286736, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55586837..55586880, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55568937..55568988, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_0730087416efc6b69ab7253f0e46f896 | p@chr4:147375901..147375913, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55572120..55572173, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_0730087416efc6b69ab7253f0e46f896 | p@chr19:36193772..36193793, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55586837..55586880, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_0730087416efc6b69ab7253f0e46f896 | p2@Mov10l1 |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744611..137744621, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55568790..55568803, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55579265..55579297, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137747953..137747967, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137747953..137747967, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_0730087416efc6b69ab7253f0e46f896 | p@chr11:65461897..65461929, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55584272..55584298, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_0730087416efc6b69ab7253f0e46f896 | p@chr4:147375901..147375913, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744636..137744654, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744333..137744352, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137747382..137747385, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55584663..55584731, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137743272..137743307, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55572120..55572173, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55581579..55581620, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55571909..55571953, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55584197..55584239, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55565785..55565833, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137745434..137745445, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55581579..55581620, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55565785..55565833, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744550..137744565, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55568737..55568746, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137747382..137747385, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55584663..55584731, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_0730087416efc6b69ab7253f0e46f896 | p@chr5:120286706..120286736, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137745434..137745445, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744636..137744654, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55568937..55568988, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_0730087416efc6b69ab7253f0e46f896 | p@chr19:36193772..36193793, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_0730087416efc6b69ab7253f0e46f896 | p@chr11:65461897..65461929, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137747289..137747313, + |
| 8.14e-77 | FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_0730087416efc6b69ab7253f0e46f896 | p@chr11:58815923..58815951, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55568790..55568803, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744611..137744621, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_0730087416efc6b69ab7253f0e46f896 | p2@Mov10l1 |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55571909..55571953, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55579265..55579297, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55563577..55563611, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744333..137744352, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744668..137744681, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55584197..55584239, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55563577..55563611, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137743272..137743307, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137747289..137747313, + |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55584272..55584298, - |
| 8.14e-77 | FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_0730087416efc6b69ab7253f0e46f896 | p@chr1:137744668..137744681, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_0730087416efc6b69ab7253f0e46f896 | p@chr11:58815923..58815951, - |
| 8.14e-77 | FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_0730087416efc6b69ab7253f0e46f896 | p@chr14:55568737..55568746, - |
| 1.2e-73 | FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_4980640629e6c0053194f3fd8ee5478b | p@chr1:137742152..137742184, - |
| 1.2e-73 | FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_4980640629e6c0053194f3fd8ee5478b | p@chr1:137742152..137742184, - |
| 1.46e-72 | FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_a4f0d8369881e49125f1a4077cd95b86 | p@chr1:137742470..137742481, + |
| 1.46e-72 | FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_a4f0d8369881e49125f1a4077cd95b86 | p@chr16:5431481..5431510, + |
| 1.46e-72 | FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_a4f0d8369881e49125f1a4077cd95b86 | p2@Tnni3 |
| 1.46e-72 | FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_a4f0d8369881e49125f1a4077cd95b86 | p@chr1:137742470..137742481, + |
| 1.46e-72 | FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_a4f0d8369881e49125f1a4077cd95b86 | p@chr14:55577329..55577367, - |
| 1.46e-72 | FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_a4f0d8369881e49125f1a4077cd95b86 | p@chr16:5431481..5431510, + |
| 1.46e-72 | FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_a4f0d8369881e49125f1a4077cd95b86 | p2@Tnni3 |
| 1.46e-72 | FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_a4f0d8369881e49125f1a4077cd95b86 | p@chr14:55577329..55577367, - |
| 1.63e-72 | FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_517e31eced63a604e0fc14c5560e37fc | p@chr5:58108164..58108178, + |
| 1.63e-72 | FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_517e31eced63a604e0fc14c5560e37fc | p5@Nebl |
| 1.63e-72 | FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_517e31eced63a604e0fc14c5560e37fc | p1@ENSMUST00000154140 |
| 1.63e-72 | FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_517e31eced63a604e0fc14c5560e37fc | p1@ENSMUST00000154140 |
| 1.63e-72 | FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_517e31eced63a604e0fc14c5560e37fc | p@chr19:36193739..36193752, - |
| 1.63e-72 | FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_517e31eced63a604e0fc14c5560e37fc | p@chr19:36193739..36193752, - |
| 1.63e-72 | FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_517e31eced63a604e0fc14c5560e37fc | p11@Arhgap31 |
| 1.63e-72 | FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_517e31eced63a604e0fc14c5560e37fc | p@chr10:53062244..53062249, + |
| 1.63e-72 | FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_517e31eced63a604e0fc14c5560e37fc | p@chr5:58108164..58108178, + |
| 1.63e-72 | FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_517e31eced63a604e0fc14c5560e37fc | p@chr10:53062244..53062249, + |
| 1.63e-72 | FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_517e31eced63a604e0fc14c5560e37fc | p5@Nebl |
| 1.63e-72 | FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_517e31eced63a604e0fc14c5560e37fc | p11@Arhgap31 |
| 1.82e-72 | FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_b97e80d204b9b9e898d44b7eb3d4dcc4 | p@chr9:24529233..24529237, - |
| 1.82e-72 | FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_b97e80d204b9b9e898d44b7eb3d4dcc4 | p@chr9:24529233..24529237, - |
| 2.03e-72 | FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_476e24a6d897a0098bb5ab1f18c741fb | p6@Usp20 |
| 2.03e-72 | FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_476e24a6d897a0098bb5ab1f18c741fb | p6@Usp20 |
