UBERON:0004209: Difference between revisions
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|located_in= | |located_in= | ||
|name=renal vesicle | |name=renal vesicle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0010536 | |part_of=UBERON:0010536 | ||
Latest revision as of 17:45, 12 September 2014
| Name: | renal vesicle |
|---|---|
| Namespace: | FANTOM |
| Definition: | "The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. " [GO:0072077] |
| Synonyms: | "stage I nephron" EXACT ZFA:0005586 |
| Comments: | Editor notes: note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007497(developing epithelial placode),UBERON:0007503(epithelial vesicle) |
|---|---|
| develops_from: | UBERON:0004208(nephrogenic mesenchyme) |
| part_of: | UBERON:0010536(nephron progenitor) |
Children
| develops from: | UBERON:0004198 (comma-shaped body),UBERON:0010532 (primitive nephron) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004209 (renal vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.87e-64 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_2c37c430723ed188cee7769131b6ee56 | p@chr2:120409486..120409492, + |
| 6.87e-64 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_2c37c430723ed188cee7769131b6ee56 | p@chr2:120409486..120409492, + |
| 9.62e-40 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_be70af6ff884ac6f15aaff1dacfe819c | p1@ENST00000413103 |
| 9.62e-40 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_be70af6ff884ac6f15aaff1dacfe819c | p1@ENST00000413103 |
| 1.16e-36 | FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_a6382e286dbdf1b5d2081fb4cb4af070 | p@chr17:79426453..79426462, + |
| 1.16e-36 | FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_a6382e286dbdf1b5d2081fb4cb4af070 | p@chr17:79426453..79426462, + |
| 1.31e-36 | FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_61498b375dc84a822ddbd50162324775 | p@chr8:77557753..77557755, - |
| 1.31e-36 | FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_61498b375dc84a822ddbd50162324775 | p@chr8:77557753..77557755, - |
| 5.58e-32 | FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_2392da3b90616dd328db4ebaddbc500f | p6@TINAGL1 |
| 5.58e-32 | FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_2392da3b90616dd328db4ebaddbc500f | p6@TINAGL1 |
| 1.53e-30 | FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_b9a660d495a350ee924a854156fcafdb | p9@FURIN |
| 1.53e-30 | FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_b9a660d495a350ee924a854156fcafdb | p9@FURIN |
| 3.83e-30 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_888028d57e6b6ea0cc9e5044ba6ffb8b | p7@LRRN4 |
| 3.83e-30 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_888028d57e6b6ea0cc9e5044ba6ffb8b | p7@LRRN4 |
| 1.78e-29 | FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_908f1ab254a86780c2bcd5b584a1faa8 | p7@OTOF |
| 1.78e-29 | FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr2:26700331..26700340, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_908f1ab254a86780c2bcd5b584a1faa8 | p7@OTOF |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr2:26700331..26700340, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_908f1ab254a86780c2bcd5b584a1faa8 | p@chr6:18225523..18225534, - |
| 7.96e-27 | FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_d6eed8dd14fec1a57a2250b83477a28b | p@chr10:3477893..3477912, - |
| 7.96e-27 | FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_d6eed8dd14fec1a57a2250b83477a28b | p@chr10:3477893..3477912, - |
| 6.29e-26 | FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_738f99ca439b716f5376a47eba1cbcd2 | p@chr1:172926077..172926120, - |
| 6.29e-26 | FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_738f99ca439b716f5376a47eba1cbcd2 | p@chr1:172926077..172926120, - |
| 6.32e-26 | FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_a41099eee94908a51cc8a52e21fb7ed7 | p5@APLN |
| 6.32e-26 | FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_a41099eee94908a51cc8a52e21fb7ed7 | p5@APLN |
| 9.89e-26 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_62f44026e6e772a4ddba62ffef7db8d7 | p@chr2:693380..693398, + |
| 9.89e-26 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_62f44026e6e772a4ddba62ffef7db8d7 | p@chr2:693380..693398, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_5c8ffea96fb24557565cceb0b47707cf | p@chr6:84849252..84849259, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_5c8ffea96fb24557565cceb0b47707cf | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_5c8ffea96fb24557565cceb0b47707cf | p@chr6:84849252..84849259, + |
| 1.28e-23 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_5c8ffea96fb24557565cceb0b47707cf | p@chr2:133426030..133426041, - |
| 1.44e-23 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_e2a0a2508ab60241a1199a56699e04ee | p23@TTC39A |
| 1.44e-23 | FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_e2a0a2508ab60241a1199a56699e04ee | p10@TRIL |
| 1.44e-23 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_e2a0a2508ab60241a1199a56699e04ee | p23@TTC39A |
| 1.44e-23 | FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_e2a0a2508ab60241a1199a56699e04ee | p10@TRIL |
| 1.61e-23 | FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_0e6bc5a6ec836d5cc1d023f47e2427f1 | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_0e6bc5a6ec836d5cc1d023f47e2427f1 | p@chr15:85403302..85403304, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_0e6bc5a6ec836d5cc1d023f47e2427f1 | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_0e6bc5a6ec836d5cc1d023f47e2427f1 | p@chr15:85403302..85403304, + |
| 1.8e-23 | FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_e9df6dec30a6e8fa7e2cbc571e98d27b | p@chr16:2141529..2141537, + |
| 1.8e-23 | FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_e9df6dec30a6e8fa7e2cbc571e98d27b | p@chr16:2141529..2141537, + |
| 2.92e-22 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_7535efc392a784eaf5f537cadbfa46f7 | p@chr5:74244100..74244117, + |
| 2.92e-22 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_7535efc392a784eaf5f537cadbfa46f7 | p@chr5:74244100..74244117, + |
| 5.69e-22 | FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_4f3b5e662c2a76585b790444f2a0a192 | p@chr5:148651758..148651769, - |
| 5.69e-22 | FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_4f3b5e662c2a76585b790444f2a0a192 | p@chr5:148651758..148651769, - |
| 2.9e-21 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_6e23282ea5d05012d781d29e27cc2e47 | p@chr16:86768403..86768437, + |
| 2.9e-21 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_6e23282ea5d05012d781d29e27cc2e47 | p@chr16:86768403..86768437, + |
| 4.78e-21 | FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_4ca89d0ccd55799e5320184d0b6dc7b0 | p@chr17:2076002..2076026, - |
| 4.78e-21 | FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_4ca89d0ccd55799e5320184d0b6dc7b0 | p@chr17:2076002..2076026, - |
| 1.26e-20 | FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_40cdc7d43231e3e268048af041dce42e | p3@FAM167B |
| 1.26e-20 | FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_40cdc7d43231e3e268048af041dce42e | p3@FAM167B |
| 2.32e-20 | FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_966bc2426ab5830fc1bb9e9d52161a09 | p@chr11:124628392..124628427, - |
| 2.32e-20 | FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_966bc2426ab5830fc1bb9e9d52161a09 | p@chr11:124628392..124628427, - |
| 3.42e-20 | FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_0567382b7c7058264906e7bcb35a5418 | p1@ENST00000487339 |
| 3.42e-20 | FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_0567382b7c7058264906e7bcb35a5418 | p1@ENST00000487339 |
| 3.44e-20 | FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_8b2d59947a9f822c6c79e8b359174a0a | p@chr19:47231340..47231383, - |
| 3.44e-20 | FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_8b2d59947a9f822c6c79e8b359174a0a | p@chr19:47231340..47231383, - |
| 3.58e-20 | FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_526136fcb33d10e19c62b4ed5226b243 | p@chr19:1826957..1826984, - |
| 3.58e-20 | FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_526136fcb33d10e19c62b4ed5226b243 | p@chr19:1826957..1826984, - |
| 4.39e-20 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_309ec1f01286eeb09a36f3b50be0ac32 | p@chr4:38057595..38057624, - |
| 4.39e-20 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_309ec1f01286eeb09a36f3b50be0ac32 | p@chr4:38057595..38057624, - |
| 7.13e-20 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_f68f7d14345215f83342f048020dd227 | p@chr2:133426106..133426117, - |
| 7.13e-20 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_f68f7d14345215f83342f048020dd227 | p@chr2:133426106..133426117, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_d26403ab91a979cb8e3320c99acd137a | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_d26403ab91a979cb8e3320c99acd137a | p@chr9:35753821..35753835, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_d26403ab91a979cb8e3320c99acd137a | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_d26403ab91a979cb8e3320c99acd137a | p@chr9:35753821..35753835, - |
| 8.62e-20 | FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_a85f81853b5fb9a2e647b8792afffc7c | p@chr4:145568170..145568180, - |
| 8.62e-20 | FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_a85f81853b5fb9a2e647b8792afffc7c | p@chr4:145568170..145568180, - |
| 1.04e-19 | FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_b8700712e088a4d231c578f215353fba | p1@WDR87 |
| 1.04e-19 | FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_b8700712e088a4d231c578f215353fba | p1@WDR87 |
| 1.15e-19 | FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_f8e606f9bba856b3ce2fcd8a6941b75a | p@chr14:91270270..91270281, - |
| 1.15e-19 | FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_f8e606f9bba856b3ce2fcd8a6941b75a | p@chr14:91270270..91270281, - |
| 2.44e-19 | FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_f07375e17eaafcdce8394d1434ce5a8d | p6@ACVRL1 |
| 2.44e-19 | FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_f07375e17eaafcdce8394d1434ce5a8d | p6@ACVRL1 |
| 3.27e-19 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_666b8df3b5ee86e43fd252dd91eeb28a | p@chr3:43538305..43538325, - |
| 3.27e-19 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_666b8df3b5ee86e43fd252dd91eeb28a | p@chr3:43538305..43538325, - |
| 4.64e-19 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_47d30c285a726633e095c245057ca97e | p@chr17:171147..171161, + |
| 4.64e-19 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_47d30c285a726633e095c245057ca97e | p@chr17:171147..171161, + |
| 5.39e-19 | FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_7a11c370c32093a82038b23370ab028b | p@chr1:22211913..22211920, + |
| 5.39e-19 | FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_7a11c370c32093a82038b23370ab028b | p@chr1:22211913..22211920, + |
| 1.99e-18 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_8b5c38414a97e98ddc3167e164f65ba9 | p7@HOXA10 |
| 1.99e-18 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_8b5c38414a97e98ddc3167e164f65ba9 | p7@HOXA10 |
| 2.69e-18 | FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_437f69039b68a603a7443320ba173005 | p3@TINAGL1 |
| 2.69e-18 | FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_437f69039b68a603a7443320ba173005 | p3@TINAGL1 |
| 4.1e-18 | FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_46bb073926f33dca0b244d507842e642 | p17@CTGF |
| 4.1e-18 | FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_46bb073926f33dca0b244d507842e642 | p17@CTGF |
| 5.7e-18 | FFCP PHASE1:Hg19::chr11:940729..940745,+#_4f16e872073068a950497cd2235ec0ef | p5@AP2A2 |
| 5.7e-18 | FFCP PHASE2:Hg19::chr11:940729..940745,+#_4f16e872073068a950497cd2235ec0ef | p5@AP2A2 |
| 6.5e-18 | FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_b66200b48c2a2eb30ddbb903b71e6353 | p@chr19:42007093..42007107, - |
| 6.5e-18 | FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_b66200b48c2a2eb30ddbb903b71e6353 | p@chr19:42007093..42007107, - |
| 6.99e-18 | FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_4cf2c3d56bd6ace541bafa41a145a276 | p@chrX:128781853..128781866, - |
| 6.99e-18 | FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_4cf2c3d56bd6ace541bafa41a145a276 | p@chrX:128781853..128781866, - |
| 1.24e-17 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_4dbe9cb22c612065409af4327614dd68 | p@chr16:86604624..86604648, + |
| 1.24e-17 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_4dbe9cb22c612065409af4327614dd68 | p@chr16:86604624..86604648, + |
