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{{UBERON
{{UBERON
|id=UBERON:0004362
|alt_id=
|name=mandibular arch
|namespace=
|def="First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_branchial_arch]
|xref=AAO:0010364;;EHDAA:573;;EHDAA2:0000006;;EMAPA:16118;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png;;ncithesaurus:First_Pharyngeal_Arch;;SCTID:308767008;;VHOG:0000296;;XAO:0000097;;ZFA:0001612
|is_a=UBERON:0002539
|synonym="1st arch" RELATED [EHDAA2:0000006];;"1st pharyngeal arch" EXACT [];;"branchial arch 1" EXACT SENSU [];;"first branchial arch" EXACT SENSU [];;"first pharyngeal arch" EXACT [];;"first visceral arch" EXACT SENSU [];;"pharyngeal arch 1" EXACT [];;"visceral arch 1" EXACT SENSU []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_pharyngeal_arch]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004362
|is_a=UBERON:0002539
|is_obsolete=
|located_in=
|located_in=
|name=pharyngeal arch 1
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The first of the series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="1st arch" RELATED [EHDAA2:0000006];;"1st pharyngeal arch" EXACT [];;"arcus pharyngeus primus" RELATED LATIN [Wikipedia:First_pharyngeal_arch];;"branchial arch 1" EXACT SENSU [];;"first branchial arch" EXACT SENSU [];;"first pharyngeal arch" EXACT [];;"first visceral arch" EXACT SENSU [];;"mandibular arch" EXACT [];;"visceral arch 1" EXACT SENSU []
|union_of=
|xref=AAO:0010364;;EHDAA2:0000006;;EHDAA:573;;EMAPA:16118;;http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png;;ncithesaurus:First_Pharyngeal_Arch;;SCTID:308767008;;TAO:0001595;;VHOG:0000296;;XAO:0000097;;ZFA:0001612
}}
}}

Latest revision as of 17:45, 12 September 2014

Name:pharyngeal arch 1
Namespace:FANTOM
Definition:"First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_pharyngeal_arch]
Xrefs:
links:

AAO:0010364
EHDAA2:0000006
EHDAA:573
EMAPA:16118
[ Gray48.png Gray48.png]
[ 200px-Gray48.png 200px-Gray48.png]
ncithesaurus:First_Pharyngeal_Arch
SCTID:308767008
TAO:0001595
VHOG:0000296
XAO:0000097

ZFA:0001612
Synonyms: "1st arch" RELATED [EHDAA2:0000006]
"1st pharyngeal arch" EXACT []
"arcus pharyngeus primus" RELATED LATIN [Wikipedia:First_pharyngeal_arch]
"branchial arch 1" EXACT SENSU []
"first branchial arch" EXACT SENSU []
"first pharyngeal arch" EXACT []
"first visceral arch" EXACT SENSU []
"mandibular arch" EXACT []
"visceral arch 1" EXACT SENSU []
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002539(pharyngeal arch)



Children

part of:UBERON:0007238 (1st arch maxillary component),UBERON:0010042 (1st arch mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004362 (pharyngeal arch 1), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_478d85bb1133ec2d024817229b513992p14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_478d85bb1133ec2d024817229b513992p14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_7eecffe7a1af54b4a0f049eee18a149bp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_7eecffe7a1af54b4a0f049eee18a149bp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_7eecffe7a1af54b4a0f049eee18a149bp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_7eecffe7a1af54b4a0f049eee18a149bp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_7eecffe7a1af54b4a0f049eee18a149bp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_7eecffe7a1af54b4a0f049eee18a149bp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_7eecffe7a1af54b4a0f049eee18a149bp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_7eecffe7a1af54b4a0f049eee18a149bp11@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_f320f64724ddd24a9e1c8c87f0939894p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_f320f64724ddd24a9e1c8c87f0939894p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_f320f64724ddd24a9e1c8c87f0939894p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_f320f64724ddd24a9e1c8c87f0939894p14@MAB21L2
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_7b2484d74d559bc4a5b13ba0be9a315fp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_7b2484d74d559bc4a5b13ba0be9a315fp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_d6c3c9d5a8045da285b6161fda82c50dp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_d6c3c9d5a8045da285b6161fda82c50dp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_d6c3c9d5a8045da285b6161fda82c50dp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_d6c3c9d5a8045da285b6161fda82c50dp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_d6c3c9d5a8045da285b6161fda82c50dp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_d6c3c9d5a8045da285b6161fda82c50dp17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_6a3e6224f049b8f9731a0be25bec351bp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_6a3e6224f049b8f9731a0be25bec351bp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_8b1563dd0a480448b944159f5751cb98p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_8b1563dd0a480448b944159f5751cb98p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_8b1563dd0a480448b944159f5751cb98p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_8b1563dd0a480448b944159f5751cb98p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_8b1563dd0a480448b944159f5751cb98p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_8b1563dd0a480448b944159f5751cb98p7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_83953bd91a2f1d03c5e183b1fa385a19p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_83953bd91a2f1d03c5e183b1fa385a19p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_83953bd91a2f1d03c5e183b1fa385a19p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_83953bd91a2f1d03c5e183b1fa385a19p23@FLT1
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_a8d165a96ce222fd5934e04b072e348ep@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_a8d165a96ce222fd5934e04b072e348ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_a8d165a96ce222fd5934e04b072e348ep@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_a8d165a96ce222fd5934e04b072e348ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_a8d165a96ce222fd5934e04b072e348ep@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_a8d165a96ce222fd5934e04b072e348ep@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_cc93c584e126fae87033e162e7653b0dp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_cc93c584e126fae87033e162e7653b0dp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_cc93c584e126fae87033e162e7653b0dp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_cc93c584e126fae87033e162e7653b0dp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_cc93c584e126fae87033e162e7653b0dp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_cc93c584e126fae87033e162e7653b0dp2@TAS1R1
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_68ea1c095883480f52c394119e6e335ap@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_68ea1c095883480f52c394119e6e335ap@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_68ea1c095883480f52c394119e6e335ap@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_68ea1c095883480f52c394119e6e335ap@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_dc19854154ae263c2f4ac0dec7ee8482p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_dc19854154ae263c2f4ac0dec7ee8482p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_dc19854154ae263c2f4ac0dec7ee8482p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_dc19854154ae263c2f4ac0dec7ee8482p@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_5180c0a38d6dbaf04721dd85fc1fa07fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_5180c0a38d6dbaf04721dd85fc1fa07fp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_5180c0a38d6dbaf04721dd85fc1fa07fp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_5180c0a38d6dbaf04721dd85fc1fa07fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_5180c0a38d6dbaf04721dd85fc1fa07fp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_5180c0a38d6dbaf04721dd85fc1fa07fp5@PENK
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_503c8cdd6a41e9ddfdc0da46ea264ffdp9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_503c8cdd6a41e9ddfdc0da46ea264ffdp9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_3bfe5fcb3a885c9be518b9d232fadb2ep@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_3bfe5fcb3a885c9be518b9d232fadb2ep@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_ab48e9eacea3c0964cfe098274e14574p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_ab48e9eacea3c0964cfe098274e14574p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_ab48e9eacea3c0964cfe098274e14574p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_ab48e9eacea3c0964cfe098274e14574p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_c5507ff94ab1130d093e1cba43aab934p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_c5507ff94ab1130d093e1cba43aab934p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_c5507ff94ab1130d093e1cba43aab934p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_c5507ff94ab1130d093e1cba43aab934p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_c5507ff94ab1130d093e1cba43aab934p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_c5507ff94ab1130d093e1cba43aab934p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_715eca560da61cf08efa95b73ba49656p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_715eca560da61cf08efa95b73ba49656p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_715eca560da61cf08efa95b73ba49656p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_715eca560da61cf08efa95b73ba49656p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_715eca560da61cf08efa95b73ba49656p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_715eca560da61cf08efa95b73ba49656p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_8efbe51384e570b1b35e58e72144568dp10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_8efbe51384e570b1b35e58e72144568dp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_8efbe51384e570b1b35e58e72144568dp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_8efbe51384e570b1b35e58e72144568dp7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_8d4a66f65fe7ee497ab7481014436274p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_8d4a66f65fe7ee497ab7481014436274p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_8d4a66f65fe7ee497ab7481014436274p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_8d4a66f65fe7ee497ab7481014436274p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_8d4a66f65fe7ee497ab7481014436274p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_8d4a66f65fe7ee497ab7481014436274p@chr17:79071218..79071221, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_6a8e72ab3d4b2a68ee209595570d44f8p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_6a8e72ab3d4b2a68ee209595570d44f8p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_546c226781f0ea3efbea62c156a3ebc4p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_546c226781f0ea3efbea62c156a3ebc4p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_546c226781f0ea3efbea62c156a3ebc4p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_546c226781f0ea3efbea62c156a3ebc4p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_546c226781f0ea3efbea62c156a3ebc4p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_546c226781f0ea3efbea62c156a3ebc4p@chr14:89044406..89044416, +
4.2e-29FFCP PHASE2:Hg19::chr1:6615468..6615485,+#_90195c617544e34bba2f4772b8ebe477p1@TAS1R1
4.2e-29FFCP PHASE1:Hg19::chr4:151503350..151503358,+#_90195c617544e34bba2f4772b8ebe477p11@MAB21L2










Property "Property value" (as page type) with input value "UBPROP:0000001 "The first of the series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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