UBERON:0004457: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004457
|name=cavity lining
|namespace=
|def=
|xref=MA:0002448
|is_a=UBERON:0004458;;UBERON:0004923
|synonym=
|comment=
|alt_id=
|disjoint_from=
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{{UBERON | {{UBERON | ||
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|created_by= | |created_by= | ||
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|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004457 | |||
|is_a=UBERON:0004458 ;;UBERON:0004923 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cavity lining | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
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|xref=MA:0002448 | |||
}} | }} | ||
Latest revision as of 17:46, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004458(body cavity or lining),UBERON:0004923(organ component layer) |
|---|
Children
| is a: | UBERON:0000042 (serous membrane) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10276-104E6
- 10304-104H7
- 10332-105B8
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11329-117E6 (Preadipocyte - omental, donor2)
- 11368-117I9 (Synoviocyte, donor2)
- 11403-118D8 (Preadipocyte - omental, donor3)
- 11440-118H9 (Synoviocyte, donor3)
- 11468-119C1 (Preadipocyte - omental, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004457 (cavity lining), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
