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|has_quality=
|has_quality=
|id=UBERON:0004645
|id=UBERON:0004645
|is_a=UBERON:0000077;;UBERON:0000365;;UBERON:0003350
|is_a=UBERON:0000077 ;;UBERON:0000365 ;;UBERON:0003350 ;;UBERON:0012275
|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
|name=urinary bladder urothelium
|name=urinary bladder urothelium
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001255;;UBERON:0001259
|part_of=UBERON:0001255;;UBERON:0001259

Latest revision as of 17:46, 12 September 2014

Name:urinary bladder urothelium
Namespace:FANTOM
Xrefs:
links:

BTO:0001694
FMA:15936
MA:0001693
ncithesaurus:Transitional_Epithelium

SCTID:25631003
Synonyms: "bladder transitional cell epithelium" EXACT [FMA:15936]
"transitional epithelium" RELATED [MA:0001693]
"transitional epithelium of urinary bladder" EXACT [FMA:15936]
"urinary bladder transitional epithelium" EXACT [FMA:15936]
"urothelium" BROAD [BTO:0001245]
"urothelium of urinary bladder" EXACT [FMA:15936]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0000365(urothelium),UBERON:0003350(epithelium of mucosa),UBERON:0012275(meso-epithelium)
part_of:UBERON:0001255(urinary bladder),UBERON:0001259(mucosa of urinary bladder)



Children

derives from:FF:0100792 (urinary bladder cancer cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004645 (urinary bladder urothelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data