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{{UBERON
{{UBERON
|id=UBERON:0004912
|alt_id=
|name=biliary bud
|namespace=
|def=
|xref=EHDAA2:0000171;;EMAPA:16561;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png;;VHOG:0001351
|is_a=UBERON:0000077;;UBERON:0003914;;UBERON:0009497
|synonym="hepatic diverticulum" RELATED [EMAPA:16561]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004161
|develops_from=UBERON:0004161
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004912
|is_a=UBERON:0003914 ;;UBERON:0009497
|is_obsolete=
|located_in=
|located_in=
|name=biliary bud
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006235
|part_of=UBERON:0006235
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="hepatic diverticulum" RELATED [EMAPA:16561]
|union_of=
|xref=EHDAA2:0000171;;EMAPA:16561;;EMAPA:16565;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png;;VHOG:0001351
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:biliary bud
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0000171
EMAPA:16561
EMAPA:16565
[ 200px-Gray1088.png 200px-Gray1088.png]

VHOG:0001351
Synonyms: "hepatic diverticulum" RELATED [EMAPA:16561]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0009497(epithelium of foregut-midgut junction)
develops_from:UBERON:0004161(septum transversum)
part_of:UBERON:0006235(foregut-midgut junction)



Children

develops from:UBERON:0001173 (biliary tree),UBERON:0002110 (gallbladder)
part of:UBERON:0006242 (gall bladder primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004912 (biliary bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_5a602257860f31ae6792ece8522f4c51p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_5a602257860f31ae6792ece8522f4c51p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_5a602257860f31ae6792ece8522f4c51p@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_5a602257860f31ae6792ece8522f4c51p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_5a602257860f31ae6792ece8522f4c51p4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_5a602257860f31ae6792ece8522f4c51p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_5a602257860f31ae6792ece8522f4c51p6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_5a602257860f31ae6792ece8522f4c51p@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_5a602257860f31ae6792ece8522f4c51p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_5a602257860f31ae6792ece8522f4c51p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_5a602257860f31ae6792ece8522f4c51p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_5a602257860f31ae6792ece8522f4c51p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_5a602257860f31ae6792ece8522f4c51p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_5a602257860f31ae6792ece8522f4c51p@chr1:137570295..137570315, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_5a602257860f31ae6792ece8522f4c51p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_5a602257860f31ae6792ece8522f4c51p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_5a602257860f31ae6792ece8522f4c51p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_5a602257860f31ae6792ece8522f4c51p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_5a602257860f31ae6792ece8522f4c51p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_5a602257860f31ae6792ece8522f4c51p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_5a602257860f31ae6792ece8522f4c51p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_5a602257860f31ae6792ece8522f4c51p@chr9:116223548..116223551, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_5a602257860f31ae6792ece8522f4c51p@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_5a602257860f31ae6792ece8522f4c51p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_5a602257860f31ae6792ece8522f4c51p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_5a602257860f31ae6792ece8522f4c51p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_5a602257860f31ae6792ece8522f4c51p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_5a602257860f31ae6792ece8522f4c51p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_5a602257860f31ae6792ece8522f4c51p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_5a602257860f31ae6792ece8522f4c51p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_5a602257860f31ae6792ece8522f4c51p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_5a602257860f31ae6792ece8522f4c51p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_5a602257860f31ae6792ece8522f4c51p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_5a602257860f31ae6792ece8522f4c51p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_5a602257860f31ae6792ece8522f4c51p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_5a602257860f31ae6792ece8522f4c51p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_5a602257860f31ae6792ece8522f4c51p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_5a602257860f31ae6792ece8522f4c51p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_5a602257860f31ae6792ece8522f4c51p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_5a602257860f31ae6792ece8522f4c51p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_5a602257860f31ae6792ece8522f4c51p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_5a602257860f31ae6792ece8522f4c51p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_5a602257860f31ae6792ece8522f4c51p@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_5a602257860f31ae6792ece8522f4c51p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_5a602257860f31ae6792ece8522f4c51p@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_5a602257860f31ae6792ece8522f4c51p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_5a602257860f31ae6792ece8522f4c51p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_5a602257860f31ae6792ece8522f4c51p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_5a602257860f31ae6792ece8522f4c51p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_5a602257860f31ae6792ece8522f4c51p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_5a602257860f31ae6792ece8522f4c51p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_5a602257860f31ae6792ece8522f4c51p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_5a602257860f31ae6792ece8522f4c51p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_5a602257860f31ae6792ece8522f4c51p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_5a602257860f31ae6792ece8522f4c51p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_5a602257860f31ae6792ece8522f4c51p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_5a602257860f31ae6792ece8522f4c51p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_5a602257860f31ae6792ece8522f4c51p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_5a602257860f31ae6792ece8522f4c51p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_5a602257860f31ae6792ece8522f4c51p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_5a602257860f31ae6792ece8522f4c51p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_5a602257860f31ae6792ece8522f4c51p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_5a602257860f31ae6792ece8522f4c51p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_5a602257860f31ae6792ece8522f4c51p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_5a602257860f31ae6792ece8522f4c51p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_5a602257860f31ae6792ece8522f4c51p6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_5a602257860f31ae6792ece8522f4c51p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_5a602257860f31ae6792ece8522f4c51p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_5a602257860f31ae6792ece8522f4c51p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_5a602257860f31ae6792ece8522f4c51p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_5a602257860f31ae6792ece8522f4c51p8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_5a602257860f31ae6792ece8522f4c51p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_5a602257860f31ae6792ece8522f4c51p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_5a602257860f31ae6792ece8522f4c51p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_5a602257860f31ae6792ece8522f4c51p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_5a602257860f31ae6792ece8522f4c51p@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_5a602257860f31ae6792ece8522f4c51p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_5a602257860f31ae6792ece8522f4c51p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_5a602257860f31ae6792ece8522f4c51p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_5a602257860f31ae6792ece8522f4c51p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_5a602257860f31ae6792ece8522f4c51p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_5a602257860f31ae6792ece8522f4c51p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_5a602257860f31ae6792ece8522f4c51p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_5a602257860f31ae6792ece8522f4c51p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_5a602257860f31ae6792ece8522f4c51p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_5a602257860f31ae6792ece8522f4c51p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_5a602257860f31ae6792ece8522f4c51p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_5a602257860f31ae6792ece8522f4c51p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_5a602257860f31ae6792ece8522f4c51p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_5a602257860f31ae6792ece8522f4c51p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_5a602257860f31ae6792ece8522f4c51p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_5a602257860f31ae6792ece8522f4c51p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_5a602257860f31ae6792ece8522f4c51p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_5a602257860f31ae6792ece8522f4c51p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_5a602257860f31ae6792ece8522f4c51p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_5a602257860f31ae6792ece8522f4c51p@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_5a602257860f31ae6792ece8522f4c51p@chr19:29573929..29573932, +

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