Personal tools

UBERON:0005333: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005333
|alt_id=UBERON:0004181
|name=mammary bud
|namespace=
|def="Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]." [GO:0060648, http://medical-dictionary.thefreedictionary.com/mammary+bud]
|xref=
|is_a=UBERON:0005153;;UBERON:0005291;;UBERON:0010371
|synonym="mammary gland bud" EXACT [GO:0060648];;"milk bud" RELATED []
|comment=
|comment=
|alt_id=UBERON:0004181
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]." [GO:0060648, http://medical-dictionary.thefreedictionary.com/mammary+bud]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0005311
|develops_from=UBERON:0005311
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005333
|is_a=UBERON:0005153 ;;UBERON:0005291 ;;UBERON:0010371
|is_obsolete=
|located_in=
|located_in=
|name=mammary bud
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000076
|part_of=UBERON:0000076
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mammary gland bud" EXACT [GO:0060648];;"milk bud" RELATED []
|union_of=
|xref=
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:mammary bud
Namespace:FANTOM
Definition:"Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]." [GO:0060648, http://medical-dictionary.thefreedictionary.com/mammary+bud]
Synonyms: "mammary gland bud" EXACT [GO:0060648]
"milk bud" RELATED []
Alt_id: UBERON:0004181

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005153(epithelial bud),UBERON:0005291(embryonic tissue),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0005311(mammary placode)
part_of:UBERON:0000076(external ectoderm)



Children

develops from:UBERON:0001911 (mammary gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005333 (mammary bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_5371cece5597d533a6bb41b1a096c7a7p4@WDR66
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_5371cece5597d533a6bb41b1a096c7a7p4@WDR66
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_eda82531963737cfc8b85f35bf0abe5bp4@CASP14
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_eda82531963737cfc8b85f35bf0abe5bp4@CASP14
1.87e-86FFCP PHASE1:Mm9::chr4:118634296..118634303,+#_f6f63028f9ccf75d3d5eb531c80e90fap6@Lao1
1.87e-86FFCP PHASE1:Mm9::chr15:98312398..98312401,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:98312398..98312401, -
1.87e-86FFCP PHASE2:Mm9::chr15:98312398..98312401,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:98312398..98312401, -
1.87e-86FFCP PHASE2:Mm9::chr1:40637138..40637147,+#_f6f63028f9ccf75d3d5eb531c80e90fap10@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr5:88213608..88213623,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88213608..88213623, -
1.87e-86FFCP PHASE1:Mm9::chr4:118640697..118640705,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr4:118640697..118640705, +
1.87e-86FFCP PHASE2:Mm9::chr1:193093195..193093197,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr1:193093195..193093197, -
1.87e-86FFCP PHASE2:Mm9::chr5:88121858..88121866,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88121858..88121866, -
1.87e-86FFCP PHASE1:Mm9::chr5:88215676..88215679,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88215676..88215679, +
1.87e-86FFCP PHASE1:Mm9::chr5:88109833..88109851,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88109833..88109851, +
1.87e-86FFCP PHASE1:Mm9::chr10:69144379..69144384,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr10:69144379..69144384, +
1.87e-86FFCP PHASE2:Mm9::chr18:6733777..6733786,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr18:6733777..6733786, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358899..88358903,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88358899..88358903, +
1.87e-86FFCP PHASE2:Mm9::chr5:38893329..38893340,-#_f6f63028f9ccf75d3d5eb531c80e90fap8@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr15:50141424..50141428,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:50141424..50141428, -
1.87e-86FFCP PHASE2:Mm9::chr5:88126164..88126171,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88126164..88126171, -
1.87e-86FFCP PHASE1:Mm9::chr5:88359054..88359083,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88359054..88359083, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123868..88123890,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88123868..88123890, +
1.87e-86FFCP PHASE2:Mm9::chr12:45501817..45501821,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr12:45501817..45501821, +
1.87e-86FFCP PHASE2:Mm9::chr5:88097629..88097633,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88097629..88097633, +
1.87e-86FFCP PHASE1:Mm9::chr5:53448964..53448972,+#_f6f63028f9ccf75d3d5eb531c80e90fap4@Slc34a2
1.87e-86FFCP PHASE1:Mm9::chr14:32247505..32247512,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr14:32247505..32247512, -
1.87e-86FFCP PHASE1:Mm9::chr11:6537276..6537305,-#_f6f63028f9ccf75d3d5eb531c80e90fap2@Wap
1.87e-86FFCP PHASE2:Mm9::chr12:8768872..8768876,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr12:8768872..8768876, -
1.87e-86FFCP PHASE2:Mm9::chr5:88109869..88109894,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88109869..88109894, +
1.87e-86FFCP PHASE1:Mm9::chr5:88213564..88213565,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88213564..88213565, +
1.87e-86FFCP PHASE1:Mm9::chr5:88104026..88104055,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88104026..88104055, +
1.87e-86FFCP PHASE1:Mm9::chr1:40637157..40637179,+#_f6f63028f9ccf75d3d5eb531c80e90fap3@Slc9a4
1.87e-86FFCP PHASE1:Mm9::chr8:8021158..8021161,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr8:8021158..8021161, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393764..103393775,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:103393764..103393775, -
1.87e-86FFCP PHASE2:Mm9::chr4:118634330..118634340,+#_f6f63028f9ccf75d3d5eb531c80e90fap4@Lao1
1.87e-86FFCP PHASE1:Mm9::chr5:88358889..88358911,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88358889..88358911, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123698..88123707,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88123698..88123707, -
1.87e-86FFCP PHASE1:Mm9::chr11:109616343..109616364,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr11:109616343..109616364, +
1.87e-86FFCP PHASE2:Mm9::chr4:118640761..118640774,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr4:118640761..118640774, +
1.87e-86FFCP PHASE1:Mm9::chr7:35963309..35963311,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr7:35963309..35963311, -
1.87e-86FFCP PHASE1:Mm9::chr15:90146874..90146878,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:90146874..90146878, -
1.87e-86FFCP PHASE2:Mm9::chr5:88209981..88209984,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88209981..88209984, +
1.87e-86FFCP PHASE2:Mm9::chr2:134688699..134688701,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr2:134688699..134688701, +
1.87e-86FFCP PHASE2:Mm9::chr11:109658712..109658715,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr11:109658712..109658715, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393393..103393402,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:103393393..103393402, +
1.87e-86FFCP PHASE2:Mm9::chr5:88104060..88104087,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88104060..88104087, -
1.87e-86FFCP PHASE1:Mm9::chr9:77686699..77686701,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr9:77686699..77686701, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209161..88209183,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88209161..88209183, -
1.87e-86FFCP PHASE1:Mm9::chr5:88099935..88099953,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88099935..88099953, -
1.87e-86FFCP PHASE2:Mm9::chr2:93360875..93360880,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr2:93360875..93360880, -
1.87e-86FFCP PHASE2:Mm9::chr1:139647999..139648007,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr1:139647999..139648007, -
1.87e-86FFCP PHASE2:Mm9::chr5:88217757..88217772,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88217757..88217772, +
1.87e-86FFCP PHASE1:Mm9::chr8:52461156..52461158,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr8:52461156..52461158, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393297..103393307,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:103393297..103393307, -
1.87e-86FFCP PHASE2:Mm9::chr11:6537234..6537253,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr11:6537234..6537253, +
1.87e-86FFCP PHASE2:Mm9::chr5:88123692..88123697,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88123692..88123697, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123567..88123572,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88123567..88123572, +
1.87e-86FFCP PHASE1:Mm9::chr12:52131128..52131133,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr12:52131128..52131133, -
1.87e-86FFCP PHASE1:Mm9::chr9:107419666..107419669,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr9:107419666..107419669, -
1.87e-86FFCP PHASE1:Mm9::chr17:30084999..30085000,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr17:30084999..30085000, +
1.87e-86FFCP PHASE2:Mm9::chr5:88206460..88206469,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88206460..88206469, +
1.87e-86FFCP PHASE1:Mm9::chr5:88203952..88203961,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88203952..88203961, +
1.87e-86FFCP PHASE1:Mm9::chr9:60519767..60519772,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr9:60519767..60519772, +
1.87e-86FFCP PHASE1:Mm9::chr5:88204836..88204843,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88204836..88204843, +
1.87e-86FFCP PHASE2:Mm9::chr5:88215650..88215658,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88215650..88215658, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123593..88123599,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88123593..88123599, -
1.87e-86FFCP PHASE1:Mm9::chr5:88217649..88217662,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88217649..88217662, -
1.87e-86FFCP PHASE1:Mm9::chr5:88111566..88111575,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88111566..88111575, +
1.87e-86FFCP PHASE1:Mm9::chr2:101613203..101613206,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr2:101613203..101613206, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358988..88358999,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88358988..88358999, -
1.87e-86FFCP PHASE2:Mm9::chr8:98629001..98629006,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr8:98629001..98629006, +
1.87e-86FFCP PHASE1:Mm9::chr17:12054056..12054058,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr17:12054056..12054058, -
1.87e-86FFCP PHASE2:Mm9::chr18:53658339..53658343,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr18:53658339..53658343, -
1.87e-86FFCP PHASE1:Mm9::chr5:88124293..88124295,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88124293..88124295, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393256..103393264,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:103393256..103393264, -
1.87e-86FFCP PHASE2:Mm9::chr5:88100023..88100041,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88100023..88100041, +
1.87e-86FFCP PHASE2:Mm9::chr9:77686674..77686686,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr9:77686674..77686686, +
1.87e-86FFCP PHASE2:Mm9::chr5:88210863..88210879,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88210863..88210879, -
1.87e-86FFCP PHASE1:Mm9::chr6:35361971..35361978,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr6:35361971..35361978, +
1.87e-86FFCP PHASE1:Mm9::chr4:118636825..118636828,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr4:118636825..118636828, +
1.87e-86FFCP PHASE2:Mm9::chr12:53708625..53708630,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr12:53708625..53708630, +
1.87e-86FFCP PHASE2:Mm9::chr5:88121676..88121704,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88121676..88121704, -
1.87e-86FFCP PHASE1:Mm9::chr5:88215607..88215628,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88215607..88215628, +
1.87e-86FFCP PHASE1:Mm9::chr5:88107041..88107085,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88107041..88107085, +
1.87e-86FFCP PHASE2:Mm9::chr11:29447361..29447364,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr11:29447361..29447364, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358854..88358874,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88358854..88358874, +
1.87e-86FFCP PHASE2:Mm9::chr19:56109584..56109587,+#_f6f63028f9ccf75d3d5eb531c80e90fap1@uc008hyp.1
1.87e-86FFCP PHASE1:Mm9::chr15:103394653..103394683,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:103394653..103394683, -
1.87e-86FFCP PHASE2:Mm9::chr13:111655159..111655168,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr13:111655159..111655168, +
1.87e-86FFCP PHASE2:Mm9::chr4:118636782..118636786,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr4:118636782..118636786, +
1.87e-86FFCP PHASE2:Mm9::chr7:112544745..112544756,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr7:112544745..112544756, -
1.87e-86FFCP PHASE1:Mm9::chr13:23550306..23550308,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr13:23550306..23550308, -
1.87e-86FFCP PHASE1:Mm9::chr11:109658712..109658715,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr11:109658712..109658715, -
1.87e-86FFCP PHASE2:Mm9::chr6:137412973..137412974,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr6:137412973..137412974, +
1.87e-86FFCP PHASE2:Mm9::chr5:88095990..88096001,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88095990..88096001, +
1.87e-86FFCP PHASE1:Mm9::chr7:75913214..75913218,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr7:75913214..75913218, -
1.87e-86FFCP PHASE1:Mm9::chr18:15483458..15483466,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr18:15483458..15483466, +
1.87e-86FFCP PHASE1:Mm9::chr11:6535604..6535612,+#_f6f63028f9ccf75d3d5eb531c80e90fap@chr11:6535604..6535612, +
1.87e-86FFCP PHASE2:Mm9::chr15:103393764..103393775,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr15:103393764..103393775, -
1.87e-86FFCP PHASE2:Mm9::chr5:88107092..88107108,-#_f6f63028f9ccf75d3d5eb531c80e90fap@chr5:88107092..88107108, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005333&oldid=3277761"