UBERON:0005742: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An outermost connective tissue covering of an organ, vessel, or other structure[WP]." [Wikipedia:Adventitia] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005742 | |||
|is_a=UBERON:0004923 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=adventitia | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="tunica advetitia" NARROW [Wikipedia:Adventitia];;"tunica externa" NARROW [FMA:45635] | ||
|union_of= | |||
|xref=BTO:0004838;;FMA:45635;;http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg | |||
}} | }} | ||
Latest revision as of 17:54, 12 September 2014
| Name: | adventitia | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An outermost connective tissue covering of an organ, vessel, or other structure[WP]." [Wikipedia:Adventitia] | ||
| Xrefs: |
| ||
| Synonyms: |
"tunica advetitia" NARROW [Wikipedia:Adventitia] "tunica externa" NARROW [FMA:45635] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004923(organ component layer) |
|---|
Children
| is a: | UBERON:0005734 (tunica adventitia of blood vessel) |
|---|---|
| part of: | CL:0002503 (adventitial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11326-117E3 (Fibroblast - Aortic Adventitial, donor2)
- 11401-118D6 (Fibroblast - Aortic Adventitial, donor3)
- 14309-155C7
- 14310-155C8 (Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction))
- 14311-155C9 (Fibroblast - Aortic Adventitial, donor3 (nuclear fraction))
- 14330-155F1
- 14331-155F2 (Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction))
- 14332-155F3 (Fibroblast - Aortic Adventitial, donor2 (nuclear fraction))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005742 (adventitia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.01e-74 | FFCP PHASE1:Hg19::chr4:67298860..67298867,-#_7d27fee8a03b3099571cf9c7e3ac2dab | p@chr4:67298860..67298867, - |
| 2.01e-74 | FFCP PHASE2:Hg19::chr4:67298860..67298867,-#_7d27fee8a03b3099571cf9c7e3ac2dab | p@chr4:67298860..67298867, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_d7793e777044f7eab13fdc45e59d92c5 | p@chr7:22687639..22687644, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr5:93904635..93904644,+#_d7793e777044f7eab13fdc45e59d92c5 | p@chr5:93904635..93904644, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr5:93904635..93904644,+#_d7793e777044f7eab13fdc45e59d92c5 | p@chr5:93904635..93904644, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_d7793e777044f7eab13fdc45e59d92c5 | p@chr7:22687639..22687644, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr11:29207409..29207435,+#_0d634f21eb025eed28de65a8ef6833ba | p@chr11:29207409..29207435, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr11:29207409..29207435,+#_0d634f21eb025eed28de65a8ef6833ba | p@chr11:29207409..29207435, + |
| 5.94e-56 | FFCP PHASE1:Hg19::chr3:46607836..46607847,-#_b732d067c4b2bee5b8750868b01024bc | p5@LRRC2 |
| 5.94e-56 | FFCP PHASE2:Hg19::chr3:46607836..46607847,-#_b732d067c4b2bee5b8750868b01024bc | p5@LRRC2 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:47835322..47835327,-#_dad3989c8898e2e803ac089a28294d44 | p@chr7:47835322..47835327, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr9:118413835..118413843,-#_dad3989c8898e2e803ac089a28294d44 | p@chr9:118413835..118413843, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:84979566..84979573,-#_dad3989c8898e2e803ac089a28294d44 | p@chr13:84979566..84979573, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:55327810..55327812,-#_dad3989c8898e2e803ac089a28294d44 | p@chr2:55327810..55327812, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:199267284..199267291,+#_dad3989c8898e2e803ac089a28294d44 | p@chr1:199267284..199267291, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:10349108..10349113,+#_dad3989c8898e2e803ac089a28294d44 | p@chr11:10349108..10349113, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:151537893..151537898,-#_dad3989c8898e2e803ac089a28294d44 | p@chr2:151537893..151537898, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:98699947..98699957,-#_dad3989c8898e2e803ac089a28294d44 | p@chr3:98699947..98699957, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:76108116..76108123,-#_dad3989c8898e2e803ac089a28294d44 | p@chr12:76108116..76108123, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:76175230..76175237,-#_dad3989c8898e2e803ac089a28294d44 | p@chr12:76175230..76175237, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:84979566..84979573,-#_dad3989c8898e2e803ac089a28294d44 | p@chr13:84979566..84979573, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:32133423..32133424,+#_dad3989c8898e2e803ac089a28294d44 | p@chr7:32133423..32133424, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr17:62679110..62679113,+#_dad3989c8898e2e803ac089a28294d44 | p@chr17:62679110..62679113, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:219498496..219498503,-#_dad3989c8898e2e803ac089a28294d44 | p@chr1:219498496..219498503, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:84807360..84807364,+#_dad3989c8898e2e803ac089a28294d44 | p@chr7:84807360..84807364, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:36796505..36796529,+#_dad3989c8898e2e803ac089a28294d44 | p@chr11:36796505..36796529, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:216588131..216588134,+#_dad3989c8898e2e803ac089a28294d44 | p@chr2:216588131..216588134, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:68614207..68614210,-#_dad3989c8898e2e803ac089a28294d44 | p@chr14:68614207..68614210, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:226851965..226851967,+#_dad3989c8898e2e803ac089a28294d44 | p@chr1:226851965..226851967, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:140070083..140070090,+#_dad3989c8898e2e803ac089a28294d44 | p@chr6:140070083..140070090, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:140070083..140070090,+#_dad3989c8898e2e803ac089a28294d44 | p@chr6:140070083..140070090, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:10349108..10349113,+#_dad3989c8898e2e803ac089a28294d44 | p@chr11:10349108..10349113, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:77703570..77703577,+#_dad3989c8898e2e803ac089a28294d44 | p@chr4:77703570..77703577, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:76175230..76175237,-#_dad3989c8898e2e803ac089a28294d44 | p@chr12:76175230..76175237, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:32133423..32133424,+#_dad3989c8898e2e803ac089a28294d44 | p@chr7:32133423..32133424, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr17:62679110..62679113,+#_dad3989c8898e2e803ac089a28294d44 | p@chr17:62679110..62679113, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:84807360..84807364,+#_dad3989c8898e2e803ac089a28294d44 | p@chr7:84807360..84807364, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:77703570..77703577,+#_dad3989c8898e2e803ac089a28294d44 | p@chr4:77703570..77703577, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:23158454..23158473,-#_dad3989c8898e2e803ac089a28294d44 | p@chr14:23158454..23158473, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:23158454..23158473,-#_dad3989c8898e2e803ac089a28294d44 | p@chr14:23158454..23158473, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:226851965..226851967,+#_dad3989c8898e2e803ac089a28294d44 | p@chr1:226851965..226851967, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:163602194..163602199,-#_dad3989c8898e2e803ac089a28294d44 | p@chr5:163602194..163602199, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:37772283..37772287,+#_dad3989c8898e2e803ac089a28294d44 | p@chr5:37772283..37772287, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:156878186..156878199,-#_dad3989c8898e2e803ac089a28294d44 | p71@CCNL1 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:141105574..141105581,-#_dad3989c8898e2e803ac089a28294d44 | p@chr3:141105574..141105581, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr19:43584268..43584275,+#_dad3989c8898e2e803ac089a28294d44 | p@chr19:43584268..43584275, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:123376383..123376386,+#_dad3989c8898e2e803ac089a28294d44 | p@chr8:123376383..123376386, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:18807662..18807665,-#_dad3989c8898e2e803ac089a28294d44 | p@chr2:18807662..18807665, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr19:43584268..43584275,+#_dad3989c8898e2e803ac089a28294d44 | p@chr19:43584268..43584275, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:18807662..18807665,-#_dad3989c8898e2e803ac089a28294d44 | p@chr2:18807662..18807665, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:129522281..129522284,-#_dad3989c8898e2e803ac089a28294d44 | p@chr8:129522281..129522284, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:163602194..163602199,-#_dad3989c8898e2e803ac089a28294d44 | p@chr5:163602194..163602199, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:37772283..37772287,+#_dad3989c8898e2e803ac089a28294d44 | p@chr5:37772283..37772287, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:162943708..162943739,+#_dad3989c8898e2e803ac089a28294d44 | p@chr2:162943708..162943739, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:14109718..14109721,+#_dad3989c8898e2e803ac089a28294d44 | p@chr5:14109718..14109721, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:28955184..28955188,+#_dad3989c8898e2e803ac089a28294d44 | p@chr21:28955184..28955188, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:54248451..54248453,-#_dad3989c8898e2e803ac089a28294d44 | p@chr10:54248451..54248453, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:107870700..107870705,-#_dad3989c8898e2e803ac089a28294d44 | p@chr8:107870700..107870705, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:54248451..54248453,-#_dad3989c8898e2e803ac089a28294d44 | p@chr10:54248451..54248453, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:29331768..29331769,-#_dad3989c8898e2e803ac089a28294d44 | p@chr11:29331768..29331769, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:156878186..156878199,-#_dad3989c8898e2e803ac089a28294d44 | p71@CCNL1 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:29800057..29800074,+#_dad3989c8898e2e803ac089a28294d44 | p@chr3:29800057..29800074, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:57128349..57128352,+#_dad3989c8898e2e803ac089a28294d44 | p@chr6:57128349..57128352, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:162943708..162943739,+#_dad3989c8898e2e803ac089a28294d44 | p@chr2:162943708..162943739, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:141105574..141105581,-#_dad3989c8898e2e803ac089a28294d44 | p@chr3:141105574..141105581, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:123376383..123376386,+#_dad3989c8898e2e803ac089a28294d44 | p@chr8:123376383..123376386, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:55327810..55327812,-#_dad3989c8898e2e803ac089a28294d44 | p@chr2:55327810..55327812, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:199267284..199267291,+#_dad3989c8898e2e803ac089a28294d44 | p@chr1:199267284..199267291, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:47835322..47835327,-#_dad3989c8898e2e803ac089a28294d44 | p@chr7:47835322..47835327, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:98699947..98699957,-#_dad3989c8898e2e803ac089a28294d44 | p@chr3:98699947..98699957, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:57128349..57128352,+#_dad3989c8898e2e803ac089a28294d44 | p@chr6:57128349..57128352, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:76108116..76108123,-#_dad3989c8898e2e803ac089a28294d44 | p@chr12:76108116..76108123, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:219498496..219498503,-#_dad3989c8898e2e803ac089a28294d44 | p@chr1:219498496..219498503, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:129522281..129522284,-#_dad3989c8898e2e803ac089a28294d44 | p@chr8:129522281..129522284, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:29331768..29331769,-#_dad3989c8898e2e803ac089a28294d44 | p@chr11:29331768..29331769, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:14109718..14109721,+#_dad3989c8898e2e803ac089a28294d44 | p@chr5:14109718..14109721, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr21:28955184..28955188,+#_dad3989c8898e2e803ac089a28294d44 | p@chr21:28955184..28955188, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:118413835..118413843,-#_dad3989c8898e2e803ac089a28294d44 | p@chr9:118413835..118413843, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:107870700..107870705,-#_dad3989c8898e2e803ac089a28294d44 | p@chr8:107870700..107870705, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:36796505..36796529,+#_dad3989c8898e2e803ac089a28294d44 | p@chr11:36796505..36796529, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:68614207..68614210,-#_dad3989c8898e2e803ac089a28294d44 | p@chr14:68614207..68614210, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:216588131..216588134,+#_dad3989c8898e2e803ac089a28294d44 | p@chr2:216588131..216588134, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:151537893..151537898,-#_dad3989c8898e2e803ac089a28294d44 | p@chr2:151537893..151537898, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:29800057..29800074,+#_dad3989c8898e2e803ac089a28294d44 | p@chr3:29800057..29800074, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr2:72789203..72789224,-#_81ef026a6a3f62e8c8da0a8014bbc647 | p@chr2:72789203..72789224, - |
| 5.14e-50 | FFCP PHASE2:Hg19::chr2:72789203..72789224,-#_81ef026a6a3f62e8c8da0a8014bbc647 | p@chr2:72789203..72789224, - |
| 5.14e-50 | FFCP PHASE1:Hg19::chr6:136397717..136397720,-#_81ef026a6a3f62e8c8da0a8014bbc647 | p@chr6:136397717..136397720, - |
| 5.14e-50 | FFCP PHASE2:Hg19::chr6:136397717..136397720,-#_81ef026a6a3f62e8c8da0a8014bbc647 | p@chr6:136397717..136397720, - |
| 2.53e-41 | FFCP PHASE2:Hg19::chr9:13707925..13707941,+#_7be752ada31064c9f458bb3c0a5871c7 | p@chr9:13707925..13707941, + |
| 2.53e-41 | FFCP PHASE1:Hg19::chr9:13707925..13707941,+#_7be752ada31064c9f458bb3c0a5871c7 | p@chr9:13707925..13707941, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_e502a70c16667e6122b6e9948598b20f | p4@ENST00000473110 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_e502a70c16667e6122b6e9948598b20f | p4@ENST00000473110 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr11:28779555..28779601,+#_61da1e699b1cf7928d6263ab1658c077 | p@chr11:28779555..28779601, + |
| 1.81e-40 | FFCP PHASE2:Hg19::chr11:28779555..28779601,+#_61da1e699b1cf7928d6263ab1658c077 | p@chr11:28779555..28779601, + |
| 2.22e-40 | FFCP PHASE1:Hg19::chr8:11373722..11373763,+#_353c599776a9cef8d9780194671ab738 | p@chr8:11373722..11373763, + |
| 2.22e-40 | FFCP PHASE1:Hg19::chr1:238811500..238811513,+#_353c599776a9cef8d9780194671ab738 | p@chr1:238811500..238811513, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chr8:11373722..11373763,+#_353c599776a9cef8d9780194671ab738 | p@chr8:11373722..11373763, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chr1:238811500..238811513,+#_353c599776a9cef8d9780194671ab738 | p@chr1:238811500..238811513, + |
| 2.22e-40 | FFCP PHASE1:Hg19::chr8:120063756..120063761,-#_353c599776a9cef8d9780194671ab738 | p@chr8:120063756..120063761, - |
| 2.22e-40 | FFCP PHASE2:Hg19::chr8:120063756..120063761,-#_353c599776a9cef8d9780194671ab738 | p@chr8:120063756..120063761, - |
