UBERON:0005856: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005856
|name=mesenchymal condensation
|namespace=
|def=
|xref=EHDAA:8979;;EHDAA2:0003148;;EMAPA:25351
|is_a=UBERON:0003104
|synonym="mesenchyme con...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005856 | |||
|is_a=UBERON:0007524 ;;UBERON:0011585 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=developing mesenchymal condensation | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="mesenchyme condensation" EXACT [EMAPA:25351] | |||
|union_of= | |||
|xref=EHDAA2:0003148;;EHDAA:8979;;EMAPA:25351 | |||
}} | }} | ||
Latest revision as of 17:55, 12 September 2014
| Name: | developing mesenchymal condensation | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: | "mesenchyme condensation" EXACT [EMAPA:25351] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007524(dense mesenchyme tissue),UBERON:0011585(cell condensation) |
|---|
Children
| is a: | UBERON:0003089 (sclerotome),UBERON:0005863 (cartilaginous condensation),UBERON:0005865 (pre-muscle condensation),UBERON:0005866 (pre-cartilage condensation) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005856 (developing mesenchymal condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_948fcb2896da58ebfdc7315f63869dcd | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_948fcb2896da58ebfdc7315f63869dcd | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_7be8c8e18fd49091650d79bd8059dba5 | p4@PAX1 |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_7be8c8e18fd49091650d79bd8059dba5 | p4@PAX1 |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_5c1b5dff3ad97078b72dbc093caa06c5 | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_5c1b5dff3ad97078b72dbc093caa06c5 | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_9877c12309292ca5b4c825e26b2ca00d | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_9877c12309292ca5b4c825e26b2ca00d | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_67a24eaac2e69e001d91d57829a21380 | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_67a24eaac2e69e001d91d57829a21380 | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_bf53a569bb1337ff0794337796d70385 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_bf53a569bb1337ff0794337796d70385 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_952f469a1bb7600f9b326ef3e2372a49 | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_952f469a1bb7600f9b326ef3e2372a49 | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_da3039c18fd6b459ca3b692cc9f8b8b4 | p15@SNED1 |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_da3039c18fd6b459ca3b692cc9f8b8b4 | p15@SNED1 |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_b6ea6e2cffb8e9504f09b983b967a0fc | p20@CAPZB |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_b6ea6e2cffb8e9504f09b983b967a0fc | p20@CAPZB |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_284e4144b7f83b9ce71799a5580899d1 | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_284e4144b7f83b9ce71799a5580899d1 | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_e9940acd2140d27a82773c423d7fe2da | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_e9940acd2140d27a82773c423d7fe2da | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_fb0d5be1f5c8240e4190636464f4c34a | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_fb0d5be1f5c8240e4190636464f4c34a | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_3ec0ead2b661a701eadecfc88a511ff5 | p6@SIX4 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_3ec0ead2b661a701eadecfc88a511ff5 | p6@SIX4 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_70d89066ed709908c4bf80d372ca3e78 | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_70d89066ed709908c4bf80d372ca3e78 | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_bce38c4faabebc5a3a938b80b6401b5d | p3@PAX1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_bce38c4faabebc5a3a938b80b6401b5d | p3@PAX1 |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_60ea9e26de4a89d916de05d05a3124be | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_60ea9e26de4a89d916de05d05a3124be | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_27b4ebdf6e014b720c526b1e0a982906 | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_27b4ebdf6e014b720c526b1e0a982906 | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_8ef7ceb552fe0a7a10f334cfb4532cb9 | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_8ef7ceb552fe0a7a10f334cfb4532cb9 | p19@HDAC9 |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_5c5e25bed8ea0e9c88806538d2379b8f | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_5c5e25bed8ea0e9c88806538d2379b8f | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_dfd8ec07f882bf7bff6525eb330cb497 | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_dfd8ec07f882bf7bff6525eb330cb497 | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_f2026df27c73ea447b3a584224aa6fee | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_f2026df27c73ea447b3a584224aa6fee | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_04dcc9d69eb88763eaea1c4c102f01f1 | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_04dcc9d69eb88763eaea1c4c102f01f1 | p1@MGC27382 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_9d1a1d1793cc8839c4e493df2a884672 | p@chr1:24217213..24217226, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_9d1a1d1793cc8839c4e493df2a884672 | p@chr1:24217213..24217226, + |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_b110dcec918d312c740da8491ef036a4 | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_b110dcec918d312c740da8491ef036a4 | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_421548137cf90338765b9b86041fdee3 | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_421548137cf90338765b9b86041fdee3 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_421548137cf90338765b9b86041fdee3 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_421548137cf90338765b9b86041fdee3 | p@chr9:33028063..33028067, - |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_4c1ab63eb4ac7d66131d5a60477a15c0 | p1@PAX1 |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_4c1ab63eb4ac7d66131d5a60477a15c0 | p1@PAX1 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_1c876355a5851bbf7d1137c9adfe91d4 | p5@PTGFR |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_1c876355a5851bbf7d1137c9adfe91d4 | p5@PTGFR |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_a541954375808fdf614c04919a31dc71 | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_a541954375808fdf614c04919a31dc71 | p@chr2:241897363..241897398, + |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_23bd309089495fa1a14bb34e96cbb79e | p2@PAX1 |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_23bd309089495fa1a14bb34e96cbb79e | p2@PAX1 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_4fd63b293a25d8547de63f3af0684ef3 | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_4fd63b293a25d8547de63f3af0684ef3 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_4fd63b293a25d8547de63f3af0684ef3 | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_4fd63b293a25d8547de63f3af0684ef3 | p16@HDAC9 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_9986a102e79ae8bb6d14a3501816842e | p4@NUP54 |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_9986a102e79ae8bb6d14a3501816842e | p4@NUP54 |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_25dea8e05c280853e4e34e6336182cec | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_25dea8e05c280853e4e34e6336182cec | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_8db5cb035936a694e17707b6cd548995 | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_8db5cb035936a694e17707b6cd548995 | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_31e6c2d13df6811dbc276baa521f17cf | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_31e6c2d13df6811dbc276baa521f17cf | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_b1863d0be155328ad2658d5f379f8221 | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_b1863d0be155328ad2658d5f379f8221 | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_7c317828a78fdfc97819a8b0ba154a10 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_7c317828a78fdfc97819a8b0ba154a10 | p2@ENST00000518706 |
| 2.96e-37 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_1e52b9324b5787a427479e3af21e42b2 | p1@ENST00000436845 |
| 2.96e-37 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_1e52b9324b5787a427479e3af21e42b2 | p1@ENST00000436845 |
| 6.92e-37 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_5ba01fa3ba9d776a20330b9c159f584d | p12@CDK5RAP2 |
| 6.92e-37 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_5ba01fa3ba9d776a20330b9c159f584d | p12@CDK5RAP2 |
| 3.28e-36 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_66e3838586a5a485ea8c0b30cf162e39 | p1@ENST00000413519 |
| 3.28e-36 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_66e3838586a5a485ea8c0b30cf162e39 | p1@ENST00000413519 |
| 9.62e-35 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_625081cd2a0d7c3e95c08f311e30754e | p4@PAX9 |
| 9.62e-35 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_625081cd2a0d7c3e95c08f311e30754e | p4@PAX9 |
| 1.8e-34 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_7ea75c91064a30afb2e493da4f1ffdf6 | p@chr7:100202784..100202796, - |
| 1.8e-34 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_7ea75c91064a30afb2e493da4f1ffdf6 | p@chr7:100202784..100202796, - |
| 3.69e-34 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_609033c0781d0c28f6a25ec24a1a460f | p8@HOXC6 |
| 3.69e-34 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_609033c0781d0c28f6a25ec24a1a460f | p8@HOXC6 |
| 5.52e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_093d5c8b2ca8f5b1229b7d41fd8e1cbe | p6@CCDC86 |
| 5.52e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_093d5c8b2ca8f5b1229b7d41fd8e1cbe | p6@CCDC86 |
| 1.43e-33 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_a8f8e1c4227549134099443c269b8d46 | p@chr20:21695435..21695452, + |
| 1.43e-33 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_a8f8e1c4227549134099443c269b8d46 | p@chr20:21695435..21695452, + |
| 2.03e-33 | FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_9b51813da4529b4e3dca7527a10dde9a | p@chr15:78817557..78817567, + |
| 2.03e-33 | FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_9b51813da4529b4e3dca7527a10dde9a | p@chr15:78817557..78817567, + |
| 3.37e-33 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_0a4ffaaa38fecfa5bc7b125dfc7b7fa4 | p26@Myo18a |
| 3.37e-33 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_0a4ffaaa38fecfa5bc7b125dfc7b7fa4 | p26@Myo18a |
| 4.33e-33 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_c368a1ceaaa56673b74ff73ba4524cd7 | p@chr9:21934585..21934591, - |
| 4.33e-33 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_c368a1ceaaa56673b74ff73ba4524cd7 | p@chr2:32482372..32482381, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_c368a1ceaaa56673b74ff73ba4524cd7 | p@chr8:75097542..75097549, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_c368a1ceaaa56673b74ff73ba4524cd7 | p@chr9:21934585..21934591, - |
