UBERON:0007625: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def=" epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0007625 | |||
|is_a=UBERON:0000483 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=pigment epithelium of eye | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000970 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="eye pigment epithelium" RELATED [MESH:A.09.371.670] | ||
|union_of= | |||
|xref=GAID:907;;MESH:A.09.371.670 | |||
}} | }} |
Latest revision as of 18:02, 12 September 2014
Name: | pigment epithelium of eye | |
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Namespace: | FANTOM | |
Definition: | " epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200] | |
Xrefs: |
| |
Synonyms: | "eye pigment epithelium" RELATED [MESH:A.09.371.670] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000483(epithelium) |
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part_of: | UBERON:0000970(eye) |
Children
is a: | UBERON:0015808 (eye epithelium) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11609-120I7 (Lens Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007625 (pigment epithelium of eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data