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{{UBERON
{{UBERON
|id=UBERON:0009749
|alt_id=
|name=limb mesenchyme
|namespace=
|def="the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261]
|xref=
|is_a=UBERON:0003104;;UBERON:0005291
|synonym="limb mesoderm" RELATED [Geisha:syn]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009749
|is_a=UBERON:0003104
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002101;;UBERON:0003285
|name=limb mesenchyme
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002101
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="limb mesoderm" RELATED [Geisha:syn]
|union_of=
|xref=
}}
}}

Latest revision as of 18:06, 12 September 2014

Name:limb mesenchyme
Namespace:FANTOM
Definition:"the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261]
Synonyms: "limb mesoderm" RELATED [Geisha:syn]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme)
part_of:UBERON:0002101(limb)



Children

is a:UBERON:0003860 (hindlimb mesenchyme),UBERON:0010881 (limb cartilage element),UBERON:0010882 (limb bone pre-cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009749 (limb mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b49cdd3eccb816c29ec3df181b795b0bp26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b49cdd3eccb816c29ec3df181b795b0bp26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_4cb7c9e083f30a1101ddafc1e16f6ec4p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_4cb7c9e083f30a1101ddafc1e16f6ec4p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_4cb7c9e083f30a1101ddafc1e16f6ec4p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_4cb7c9e083f30a1101ddafc1e16f6ec4p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_4cb7c9e083f30a1101ddafc1e16f6ec4p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_4cb7c9e083f30a1101ddafc1e16f6ec4p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_fc113c199a4333d062935f020996fa6ep@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_fc113c199a4333d062935f020996fa6ep@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_4ace04ff76c4e23a48cbd136a37d3d2ep@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_4ace04ff76c4e23a48cbd136a37d3d2ep@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_9619f287df14e0487786f8d4f931eed5p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_9619f287df14e0487786f8d4f931eed5p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_9619f287df14e0487786f8d4f931eed5p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_9619f287df14e0487786f8d4f931eed5p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_9619f287df14e0487786f8d4f931eed5p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_9619f287df14e0487786f8d4f931eed5p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_9619f287df14e0487786f8d4f931eed5p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_9619f287df14e0487786f8d4f931eed5p@chr1:174140324..174140335, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_f748bbf6117223d9b4276fc9d1c72ca7p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_f748bbf6117223d9b4276fc9d1c72ca7p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_0c6dd23d127f074dc5b2e71d90ff927bp@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_0c6dd23d127f074dc5b2e71d90ff927bp@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_cc17dc5cabe903f55ecaaedab2a39962p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_cc17dc5cabe903f55ecaaedab2a39962p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_451bc83e119215a25a8f07c186dd7cf1p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_451bc83e119215a25a8f07c186dd7cf1p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_8acdc23ae462b550d9ec59494874ef8bp5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_8acdc23ae462b550d9ec59494874ef8bp5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_14bad38b451ea17213ee2d1cc51dfc7bp2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_14bad38b451ea17213ee2d1cc51dfc7bp2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_94f2b481b07a888bd1001017cdd9d888p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_94f2b481b07a888bd1001017cdd9d888p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_91d9a4dd1c391c908a7859baf3c9d2c1p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_91d9a4dd1c391c908a7859baf3c9d2c1p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_91d9a4dd1c391c908a7859baf3c9d2c1p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_91d9a4dd1c391c908a7859baf3c9d2c1p2@Oscar
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_38fcadab582aefaf1c6260ffda21b02fp4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_38fcadab582aefaf1c6260ffda21b02fp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_38fcadab582aefaf1c6260ffda21b02fp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_38fcadab582aefaf1c6260ffda21b02fp@chr11:75409652..75409664, +
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_1da7f08a575076be2b7d35bd3a1f6f73p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_1da7f08a575076be2b7d35bd3a1f6f73p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_fa28761bde65b17e2294d35f1dc1f2cfp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_fa28761bde65b17e2294d35f1dc1f2cfp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_fa28761bde65b17e2294d35f1dc1f2cfp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_fa28761bde65b17e2294d35f1dc1f2cfp@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_baf290fa952e480f01c9b51f507a7986p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_baf290fa952e480f01c9b51f507a7986p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_19c64873ee2ce10a1a446ce308db7a34p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_19c64873ee2ce10a1a446ce308db7a34p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_19c64873ee2ce10a1a446ce308db7a34p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_19c64873ee2ce10a1a446ce308db7a34p@chr12:70396969..70396979, +
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_e37deb5b758db9bae4affec0c6ae0a31p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_e37deb5b758db9bae4affec0c6ae0a31p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_26f41ca1df9dc04206a76d89b0db87fep2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_26f41ca1df9dc04206a76d89b0db87fep2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_b8e9b2c8db568ccf7cde999e7d2aec86p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_b8e9b2c8db568ccf7cde999e7d2aec86p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_5a752a938ad809d20244b8f626adf179p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_5a752a938ad809d20244b8f626adf179p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_28bead26cd2c23329ed3467de1401f2cp1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_28bead26cd2c23329ed3467de1401f2cp@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_28bead26cd2c23329ed3467de1401f2cp1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_28bead26cd2c23329ed3467de1401f2cp@chr11:67056544..67056589, -
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3p@chrY:2858251..2858257, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_091d93d6d733c36a35642b101d77accfp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_091d93d6d733c36a35642b101d77accfp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_149e21d0c33b1b11e2de92537196b265p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_149e21d0c33b1b11e2de92537196b265p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_428a5837b748872592901bf7623e5ceep@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_428a5837b748872592901bf7623e5ceep@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_652eb9d73c9a1ee6aed17b8c1d2e313ep1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_652eb9d73c9a1ee6aed17b8c1d2e313ep1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_7967814a08579c865342c392a4b08bacp6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_7967814a08579c865342c392a4b08bacp6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_2e65e1f28748a57b90180966e907d951p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_2e65e1f28748a57b90180966e907d951p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_1160f2b02c6062560ed26fd32d76ac18p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_1160f2b02c6062560ed26fd32d76ac18p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_1160f2b02c6062560ed26fd32d76ac18p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_1160f2b02c6062560ed26fd32d76ac18p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_5c696be91a45cec00cd538c3d431c0c7p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_5c696be91a45cec00cd538c3d431c0c7p4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_1464a5c5e2ca50b1167e81817b7bbe14p1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_1464a5c5e2ca50b1167e81817b7bbe14p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_f01ecd0bca127b05ec34e673659d8695p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_f01ecd0bca127b05ec34e673659d8695p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_f01ecd0bca127b05ec34e673659d8695p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_f01ecd0bca127b05ec34e673659d8695p2@Tm4sf19
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_5b807db699a08fedcd42b169b92bb0bbp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_5b807db699a08fedcd42b169b92bb0bbp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_5b807db699a08fedcd42b169b92bb0bbp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_5b807db699a08fedcd42b169b92bb0bbp5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_d56ecbd61eacbc515743d772125a5f9ep@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_d56ecbd61eacbc515743d772125a5f9ep2@Siglec15

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