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{{UBERON
{{UBERON
|id=UBERON:0010129
|alt_id=
|name=femur cartilage condensation
|namespace=
|def=
|xref=EMAPA:17742
|is_a=UBERON:0005254;;UBERON:0010885
|synonym="femoral cartilage condensation" EXACT [EMAPA:17742]
|comment=TODO - request EHDAA2
|comment=TODO - request EHDAA2
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0006234
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010129
|is_a=UBERON:0005254 ;;UBERON:0010881 ;;UBERON:0010885 ;;UBERON:0015052
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=femur cartilage element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0005254
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="femoral cartilage condensation" EXACT [EMAPA:17742]
|union_of=
|xref=EMAPA:17742
}}
}}

Latest revision as of 18:08, 12 September 2014

Name:femur cartilage element
Namespace:FANTOM
Xrefs:
links:
EMAPA:17742
Synonyms: "femoral cartilage condensation" EXACT [EMAPA:17742]
Comments:TODO - request EHDAA2

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005254(upper leg mesenchyme),UBERON:0010881(limb cartilage element),UBERON:0010885(hindlimb cartilage element),UBERON:0015052(femur endochondral element)
develops_from:UBERON:0006234(femur pre-cartilage condensation)
part_of:UBERON:0005254(upper leg mesenchyme)



Children

develops from:UBERON:0000981 (femur)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010129 (femur cartilage element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b20b405168ece2cd79718456e1f1f5a4p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b20b405168ece2cd79718456e1f1f5a4p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_59ac7abefcbc9cdfc2bacc11ea105640p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_59ac7abefcbc9cdfc2bacc11ea105640p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_59ac7abefcbc9cdfc2bacc11ea105640p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_59ac7abefcbc9cdfc2bacc11ea105640p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_59ac7abefcbc9cdfc2bacc11ea105640p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_59ac7abefcbc9cdfc2bacc11ea105640p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_3d2e6bedb65d10a204650b75fa8a27cdp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_3d2e6bedb65d10a204650b75fa8a27cdp@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_e06ecf75a560a212d60d92b6c8bfd8eap@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_e06ecf75a560a212d60d92b6c8bfd8eap@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_84c1823863fc55cf465339a66c2ce793p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_84c1823863fc55cf465339a66c2ce793p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_84c1823863fc55cf465339a66c2ce793p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_84c1823863fc55cf465339a66c2ce793p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_84c1823863fc55cf465339a66c2ce793p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_84c1823863fc55cf465339a66c2ce793p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_84c1823863fc55cf465339a66c2ce793p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_84c1823863fc55cf465339a66c2ce793p@chr1:174140324..174140335, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_a6cfcd8fb6bbcfd13c022240934854b0p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_a6cfcd8fb6bbcfd13c022240934854b0p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_2fca34e3a820d90e74f568f4099b34e8p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_2fca34e3a820d90e74f568f4099b34e8p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_3043f496c837e04523e15c64ffdc6e79p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_3043f496c837e04523e15c64ffdc6e79p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_68ec97c8bb8b1eecf925b5da4dc77665p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_68ec97c8bb8b1eecf925b5da4dc77665p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_0bb72e26fd71c7b76cb3870c9eaa6442p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_0bb72e26fd71c7b76cb3870c9eaa6442p5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_92223184e9c0a32b4138ee4408862ce2p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_92223184e9c0a32b4138ee4408862ce2p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_632a752c374399bd3430b63c698943a4p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_632a752c374399bd3430b63c698943a4p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_836292b076e055f36fb8c94acb4b081dp2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_836292b076e055f36fb8c94acb4b081dp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_836292b076e055f36fb8c94acb4b081dp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_836292b076e055f36fb8c94acb4b081dp2@Oscar
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_3bfbfad8bd095b147bb41b6258f5ab70p4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_3bfbfad8bd095b147bb41b6258f5ab70p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_3bfbfad8bd095b147bb41b6258f5ab70p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_3bfbfad8bd095b147bb41b6258f5ab70p@chr11:75409652..75409664, +
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_8a25e17d9e343cc652d7d3ddf5525152p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_8a25e17d9e343cc652d7d3ddf5525152p6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_14c82d0aa1565600183f1c7342c207b0p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_14c82d0aa1565600183f1c7342c207b0p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_14c82d0aa1565600183f1c7342c207b0p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_14c82d0aa1565600183f1c7342c207b0p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_88a5deb9d5f31035a592d874185a8ef7p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_88a5deb9d5f31035a592d874185a8ef7p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_f968a26e969eb44c23f9cc8eba792936p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_f968a26e969eb44c23f9cc8eba792936p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_f968a26e969eb44c23f9cc8eba792936p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_f968a26e969eb44c23f9cc8eba792936p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_7a27804997cf25f62956badaa261c41cp@chr7:133590998..133591009, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_7a27804997cf25f62956badaa261c41cp@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_9aca7882c13586013b773a269e298ac0p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_9aca7882c13586013b773a269e298ac0p2@Myoz3
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_230c82e38099de5332b1e947fd26796bp2@Myh4
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_230c82e38099de5332b1e947fd26796bp2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_3c3e4b2f9ab1d74a99073373073cd43fp@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_3c3e4b2f9ab1d74a99073373073cd43fp@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_cfed055919e96fcc5bd7bf3bd88095f4p1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_cfed055919e96fcc5bd7bf3bd88095f4p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_cfed055919e96fcc5bd7bf3bd88095f4p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_cfed055919e96fcc5bd7bf3bd88095f4p@chr11:67056544..67056589, -
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_88a5c3a4fa41a084bc96f7f985be4972p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_88a5c3a4fa41a084bc96f7f985be4972p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_88a5c3a4fa41a084bc96f7f985be4972p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_88a5c3a4fa41a084bc96f7f985be4972p@chrY:2858251..2858257, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_14f8f44bfb680c5e7f21fdbe73e076afp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_14f8f44bfb680c5e7f21fdbe73e076afp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_a87d2922f2d8b921257bfcfced178479p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_a87d2922f2d8b921257bfcfced178479p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_92f35e9e1edb5e21364d19e2d1f1f77ep@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_92f35e9e1edb5e21364d19e2d1f1f77ep@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_65654c038838e0bdc1429b6964cca2c6p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_65654c038838e0bdc1429b6964cca2c6p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_c9b67a7ef6d525462cc93280db984d84p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_c9b67a7ef6d525462cc93280db984d84p6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_61f33937532c793eb965f9fcb99fc87fp7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_61f33937532c793eb965f9fcb99fc87fp7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_76c0a43e57ee0efb532af90c91e9117dp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_76c0a43e57ee0efb532af90c91e9117dp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_76c0a43e57ee0efb532af90c91e9117dp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_76c0a43e57ee0efb532af90c91e9117dp@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_7780032e32df3e53fd970433939307f9p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_7780032e32df3e53fd970433939307f9p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_96db3c89d267fdcc49cb794fdb4345b6p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_96db3c89d267fdcc49cb794fdb4345b6p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_b8e3f6874788dbfabf4a5f3c92e2e596p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_b8e3f6874788dbfabf4a5f3c92e2e596p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_b8e3f6874788dbfabf4a5f3c92e2e596p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_b8e3f6874788dbfabf4a5f3c92e2e596p2@Tm4sf19
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_d727d461e3bfaf7bdaf9d4cfb3b2988dp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_d727d461e3bfaf7bdaf9d4cfb3b2988dp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_d727d461e3bfaf7bdaf9d4cfb3b2988dp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_d727d461e3bfaf7bdaf9d4cfb3b2988dp5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_f947f48607e22f8f4d5010b8a7d52fdap@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_f947f48607e22f8f4d5010b8a7d52fdap2@Siglec15

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