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{{UBERON
{{UBERON
|id=UBERON:0011143
|alt_id=
|name=upper urinary tract
|namespace=
|def="Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658]
|xref=FMA:45658;;galen:UpperUrinaryTract;;SCTID:181413006
|is_a=UBERON:0000477;;UBERON:0006554
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0011143
|is_a=UBERON:0000477 ;;UBERON:0006554 ;;UBERON:0015212
|is_obsolete=
|located_in=
|located_in=
|name=upper urinary tract
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001008
|part_of=UBERON:0001008
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:45658;;galen:UpperUrinaryTract;;SCTID:181413006
}}
}}

Latest revision as of 18:10, 12 September 2014

Name:upper urinary tract
Namespace:FANTOM
Definition:"Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658]
Xrefs:
links:

FMA:45658
galen:UpperUrinaryTract

SCTID:181413006

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0006554(urinary system structure),UBERON:0015212(lateral structure)
part_of:UBERON:0001008(renal system)



Children

part of:UBERON:0000056 (ureter),UBERON:0002113 (kidney)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0011143 (upper urinary tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.73e-86FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_75e446fbffe3ca28a48ef0edb2894e00p4@PAX2
1.73e-86FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_75e446fbffe3ca28a48ef0edb2894e00p4@PAX2
2.28e-80FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_ae39705b8b761ce3522487e5024220afp6@Hoxd8
2.28e-80FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_ae39705b8b761ce3522487e5024220afp6@Hoxd8
3.64e-74FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_2c18d07a9c7112152eb67eb1d63c205bp8@Hoxd8
3.64e-74FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_2c18d07a9c7112152eb67eb1d63c205bp8@Hoxd8
5.03e-73FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_ac6298361e498bdcdfa569aff3813e61p3@PAX2
5.03e-73FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_ac6298361e498bdcdfa569aff3813e61p3@PAX2
3.13e-70FFCP PHASE2:Hg19::chr2:693380..693398,+#_ca757ef2b7faa1e9fbfdbed4dc5e1964p@chr2:693380..693398, +
3.13e-70FFCP PHASE1:Hg19::chr2:693380..693398,+#_ca757ef2b7faa1e9fbfdbed4dc5e1964p@chr2:693380..693398, +
5.44e-68FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_08b9d3138d2d598236f67280c2365a58p@chr19:44824107..44824111, -
5.44e-68FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_08b9d3138d2d598236f67280c2365a58p@chr19:44824107..44824111, -
6.57e-66FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_9897567055806f0d8d1d1e7e3b9ffbecp7@HOXA10
6.57e-66FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_9897567055806f0d8d1d1e7e3b9ffbecp7@HOXA10
2.27e-64FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_5bd931e6def964bd88e9aa6458a7fe25p2@PAX2
2.27e-64FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_5bd931e6def964bd88e9aa6458a7fe25p2@PAX2
2.61e-63FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_c393c1e6ca4674208e458f1091ef907cp4@AIF1L
2.61e-63FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_c393c1e6ca4674208e458f1091ef907cp4@AIF1L
9.07e-63FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_a348d94213d26d389f12a01874ca4042p1@ENST00000418041, p1@ENST00000443104
9.07e-63FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_a348d94213d26d389f12a01874ca4042p1@ENST00000418041, p1@ENST00000443104
1.43e-62FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_be305297836512866ace6909dfbfd926p@chr10:3291561..3291580, +
1.43e-62FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_be305297836512866ace6909dfbfd926p@chr10:3291561..3291580, +
7.58e-62FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_6f34d5b4f77cc58de1becc4b6b0fd032p@chr19:44899724..44899728, +
7.58e-62FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_6f34d5b4f77cc58de1becc4b6b0fd032p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_6f34d5b4f77cc58de1becc4b6b0fd032p@chr19:44899724..44899728, +
7.58e-62FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_6f34d5b4f77cc58de1becc4b6b0fd032p@chr19:44821149..44821161, +
4.78e-61FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_8201cbfe4b535693de410310f7ebc54fp4@MEGF11
4.78e-61FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_8201cbfe4b535693de410310f7ebc54fp4@MEGF11
1.07e-59FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_2350b37b1823b627b5e09ea4a7be8a2dp@chr8:107148422..107148433, +
1.07e-59FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_2350b37b1823b627b5e09ea4a7be8a2dp@chr8:107148422..107148433, +
6.23e-58FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_286ceff5129f338bfd518b05659b4fc9p@chr10:50689167..50689171, +
6.23e-58FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_286ceff5129f338bfd518b05659b4fc9p@chr10:50689167..50689171, +
8.0e-58FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_4d61a359d882cd35321c9788018c8b42p@chr5:24755801..24755819, +
8.0e-58FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_4d61a359d882cd35321c9788018c8b42p@chr5:24755801..24755819, +
1.03e-57FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_03dbc3f6a0b2e8a9b0c87edd4606c68cp@chr19:59532611..59532623, +
1.03e-57FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_03dbc3f6a0b2e8a9b0c87edd4606c68cp@chr19:59532611..59532623, +
2.2e-56FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_5c08bb000409d183e2aa0dd0a17013f8p1@ENSMUST00000154177
2.2e-56FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_5c08bb000409d183e2aa0dd0a17013f8p1@ENSMUST00000154177
9.89e-56FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_bc56062f03fa79d560f600aabb449accp3@uc009jll.1
9.89e-56FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_bc56062f03fa79d560f600aabb449accp4@Ros1
9.89e-56FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_bc56062f03fa79d560f600aabb449accp@chr8:118959620..118959632, -
9.89e-56FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_bc56062f03fa79d560f600aabb449accp7@Steap2
9.89e-56FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_bc56062f03fa79d560f600aabb449accp@chr10:39251651..39251690, +
9.89e-56FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_bc56062f03fa79d560f600aabb449accp2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_bc56062f03fa79d560f600aabb449accp4@Ros1
9.89e-56FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_bc56062f03fa79d560f600aabb449accp@chr10:79277411..79277429, +
9.89e-56FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_bc56062f03fa79d560f600aabb449accp@chr19:17554168..17554181, +
9.89e-56FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_bc56062f03fa79d560f600aabb449accp7@Steap2
9.89e-56FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_bc56062f03fa79d560f600aabb449accp@chr8:118959620..118959632, -
9.89e-56FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_bc56062f03fa79d560f600aabb449accp@chr2:74971765..74971779, -
9.89e-56FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_bc56062f03fa79d560f600aabb449accp@chr2:74971765..74971779, -
9.89e-56FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_bc56062f03fa79d560f600aabb449accp2@Nphs1
9.89e-56FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_bc56062f03fa79d560f600aabb449accp2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_bc56062f03fa79d560f600aabb449accp@chr10:50622895..50622905, +
9.89e-56FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_bc56062f03fa79d560f600aabb449accp3@uc009jll.1
9.89e-56FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_bc56062f03fa79d560f600aabb449accp@chr10:79277411..79277429, +
9.89e-56FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_bc56062f03fa79d560f600aabb449accp@chr10:50622895..50622905, +
9.89e-56FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_bc56062f03fa79d560f600aabb449accp@chr10:39251651..39251690, +
9.89e-56FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_bc56062f03fa79d560f600aabb449accp@chr19:17554168..17554181, +
9.89e-56FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_bc56062f03fa79d560f600aabb449accp2@Nphs1
9.89e-56FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_bc56062f03fa79d560f600aabb449accp@chr7:47891824..47891827, -
9.89e-56FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_bc56062f03fa79d560f600aabb449accp@chr7:47891824..47891827, -
1.76e-55FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_868db192d9fb29259acdc1179949d9f2p@chr18:3456189..3456200, +
1.76e-55FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_868db192d9fb29259acdc1179949d9f2p@chr18:3456189..3456200, +
3.07e-55FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_b2e1beb2c4673cbdfcd4ff9ca8c3df28p@chr9:119741711..119741743, -
3.07e-55FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_b2e1beb2c4673cbdfcd4ff9ca8c3df28p@chr9:119741711..119741743, -
6.17e-52FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_56c24d6b52e6257641d3103629ce76c8p@chr11:75720190..75720216, -
6.17e-52FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_56c24d6b52e6257641d3103629ce76c8p@chr11:75720190..75720216, -
6.97e-52FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_315a9d28c8a2e982bfed6db626ebd81dp3@2810008M24Rik
6.97e-52FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_315a9d28c8a2e982bfed6db626ebd81dp3@2810008M24Rik
1.64e-51FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_c137bbe666daf32b0c77c48080e84c3dp1@ENSMUST00000143898
1.64e-51FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_c137bbe666daf32b0c77c48080e84c3dp1@ENSMUST00000143898
6.24e-51FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_cd43caa1a5a6ebf6cc20ef37fcf556fap@chr7:7606139..7606151, -
6.24e-51FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_cd43caa1a5a6ebf6cc20ef37fcf556fap@chr7:7606139..7606151, -
1.67e-50FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_628049f1ff61a153fab37d90ea2c48fcp4@Pdzk1
1.67e-50FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_628049f1ff61a153fab37d90ea2c48fcp4@Pdzk1
2.31e-50FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_76e128ef2cfb88ca4bdfbac6cd331a08p8@Rgnef
2.31e-50FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_76e128ef2cfb88ca4bdfbac6cd331a08p8@Rgnef
2.36e-50FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_e159352304f32ea4c83f36da84f410eap5@Cldn8
2.36e-50FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_e159352304f32ea4c83f36da84f410eap5@Cldn8
2.38e-50FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_52766fc5d94d7fab0c08587053123f1cp@chr3:154257229..154257241, -
2.38e-50FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_52766fc5d94d7fab0c08587053123f1cp4@Nphs1
2.38e-50FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_52766fc5d94d7fab0c08587053123f1cp2@uc009jll.1
2.38e-50FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_52766fc5d94d7fab0c08587053123f1cp@chr10:12353875..12353921, -
2.38e-50FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_52766fc5d94d7fab0c08587053123f1cp@chr10:12353875..12353921, -
2.38e-50FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_52766fc5d94d7fab0c08587053123f1cp4@Nphs1
2.38e-50FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_52766fc5d94d7fab0c08587053123f1cp@chr3:154257229..154257241, -
2.38e-50FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_52766fc5d94d7fab0c08587053123f1cp2@uc009jll.1
3.53e-50FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_2f5e00debf3400bf9a729c4bed86c6efp@chr10:3291584..3291599, +
3.53e-50FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_2f5e00debf3400bf9a729c4bed86c6efp@chr10:3291584..3291599, +
5.98e-50FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_b05f13df6d0baea624652eaa2aca6befp9@Ppt2
5.98e-50FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_b05f13df6d0baea624652eaa2aca6befp9@Ppt2
6.48e-50FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_b3dcd1793130b36e22393a30cd024569p5@Scp2
6.48e-50FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_b3dcd1793130b36e22393a30cd024569p5@Scp2
7.43e-50FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_67a2a73143bc7627fceaa364fc8ccfabp7@Hoxd8
7.43e-50FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_67a2a73143bc7627fceaa364fc8ccfabp7@Hoxd8
1.21e-49FFCP PHASE1:Mm9::chr2:152447861..152447872,-#_f436e0b5576c540283f66e43c359f696p@chr2:152447861..152447872, -
1.21e-49FFCP PHASE2:Mm9::chr2:74543143..74543158,+#_f436e0b5576c540283f66e43c359f696p9@Hoxd8
1.21e-49FFCP PHASE1:Mm9::chr12:94512176..94512186,-#_f436e0b5576c540283f66e43c359f696p@chr12:94512176..94512186, -
1.21e-49FFCP PHASE2:Mm9::chr12:31949130..31949155,+#_f436e0b5576c540283f66e43c359f696p@chr12:31949130..31949155, +

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