FFCP PHASE1:Hg19::chr11:28857853..28857858,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:28857853..28857858,- to FFCP PHASE1:Hg19::chr11:28857853..28857858,-: NSchange) |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr11:28857853..28857858,- | |||
|description=CAGE_peak_at_chr11:28857853..28857858,- | |||
|id=chr11:28857853..28857858,- | |||
|ontology_enrichment_celltype=CL:0000359!5.81e-20!32;CL:0000222!3.19e-15!119;CL:0000055!1.02e-14!180;CL:0000192!1.81e-13!42;CL:0000514!1.81e-13!42;CL:0000144!3.70e-12!625;CL:0000220!2.53e-11!246;CL:0002321!4.36e-11!248;CL:0000548!5.47e-11!679;CL:0000004!5.47e-11!679;CL:0000255!5.47e-11!679;CL:0000012!8.80e-11!682;CL:0000077!9.26e-11!19;CL:0000187!7.76e-10!54;CL:0000680!8.34e-10!57;CL:0000056!8.34e-10!57;CL:0000355!8.34e-10!57;CL:0000057!1.90e-09!75;CL:0000393!3.62e-09!60;CL:0000211!3.62e-09!60;CL:0000183!1.92e-08!59;CL:0000003!3.46e-08!722;CL:0002371!3.98e-08!591;CL:0000213!1.61e-07!57;CL:0000215!1.61e-07!57;CL:0000076!3.42e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.77e-10;32!CL:1000306;1.81e-08;4!CL:0002547;1.81e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.99e-10,32;CL:1000306,2.06e-08,4;CL:0002547,2.06e-08,4;CL:0000222,1.29e-07,121;CL:0000192,2.04e-07,43;CL:0000514,2.04e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.54e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!3.98e-20!42;UBERON:0003509!3.98e-20!42;UBERON:0004572!3.98e-20!42;UBERON:0002049!5.53e-20!79;UBERON:0007798!5.53e-20!79;UBERON:0001981!2.71e-17!60;UBERON:0007500!2.71e-17!60;UBERON:0004537!2.71e-17!60;UBERON:0006965!2.71e-17!60;UBERON:0004535!3.97e-16!110;UBERON:0001009!2.45e-15!113;UBERON:0004872!3.76e-15!84;UBERON:0000055!9.39e-15!69;UBERON:0004573!2.36e-14!33;UBERON:0004571!2.36e-14!33;UBERON:0003914!5.57e-12!118;UBERON:0000914!7.71e-10!83;UBERON:0002329!7.71e-10!83;UBERON:0003077!7.71e-10!83;UBERON:0003059!7.71e-10!83;UBERON:0007282!7.71e-10!83;UBERON:0009618!7.71e-10!83;UBERON:0007285!7.71e-10!83;UBERON:0000490!8.05e-09!138;UBERON:0001134!1.03e-08!61;UBERON:0002036!1.03e-08!61;UBERON:0003082!1.03e-08!61;UBERON:0002385!3.18e-08!63;UBERON:0001015!3.18e-08!63;UBERON:0000383!3.18e-08!63;UBERON:0000486!4.04e-08!82;UBERON:0004290!1.34e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.54e-12;33!UBERON:0004571;3.54e-12;33!UBERON:0001637;2.20e-11;42!UBERON:0003509;2.20e-11;42!UBERON:0004572;2.20e-11;42!UBERON:0007500;1.76e-10;56!UBERON:0001981;1.76e-10;56!UBERON:0004537;1.76e-10;56!UBERON:0004797;1.81e-08;4!UBERON:0000415;1.81e-08;4!UBERON:0007240;1.81e-08;4!UBERON:0005742;1.81e-08;4!UBERON:0005734;1.81e-08;4!UBERON:0004664;1.81e-08;4!UBERON:0004663;1.81e-08;4!UBERON:0000055;5.50e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.24e-15,42;UBERON:0003509,1.24e-15,42;UBERON:0004572,1.24e-15,42;UBERON:0004573,5.73e-13,33;UBERON:0004571,5.73e-13,33;UBERON:0007500,5.82e-13,59;UBERON:0001981,5.82e-13,59;UBERON:0004537,5.82e-13,59;UBERON:0006965,5.82e-13,59;UBERON:0000055,5.45e-11,68;UBERON:0004872,1.99e-10,83;UBERON:0002049,2.47e-09,78;UBERON:0007798,2.47e-09,78;UBERON:0000415,2.06e-08,4;UBERON:0007240,2.06e-08,4;UBERON:0005742,2.06e-08,4;UBERON:0005734,2.06e-08,4;UBERON:0004664,2.06e-08,4;UBERON:0004663,2.06e-08,4;UBERON:0003914,4.62e-08,117;UBERON:0004535,2.00e-07,109;UBERON:0001009,3.60e-07,112 | |||
|phase1_expression=0,0,0,1.0007329835313,0.446961094427288,0,0,0,0,0.491467873003018,1.39560233594486,0,0,0,0,0.672325146451775,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,0,0,0.189069634328136,0.221729397462564,0.351339142772504,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0,2.08994966536811,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,1.89853131913626,0.183201743930407,0,0,0,0,0.12663051166458,8.73900593367244,2.0078563452417,0,0.560677600142307,2.1349799145941,0.24666754841716,0,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0,0.245668634623536,0,0,0.741800787835671,0,0,0.336672227908132,0,0,0.438977620880838,1.22595118319608,1.05166641234618,0.340296549480063,3.22901344239952,0.427114777637135,0,0.300091096084402,0.309157587715317,1.28820270022815,0,0.168776332241266,0.389748020644795,0.504867548488229,0.0920498986422993,0,1.06502877754984,0.302256294682921,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,0,0,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,1.44331342025273,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0.93733833986777,0.335964256397719,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0.791951872933429,0,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0.468565659970853,0,0,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,0,0,0,0,0,0,0.248107807818777,0.460385919864187,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0.459257792658427,0,0,0,0.308061348417659,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.765676274967505,0,0,2.83331112147576,0,0.924100740528266,0,2.60979897622522,1.11194531462352,0.715624433709956,0.372158369359667,0.316379424718726,0.38126038784765,0,0,0.636406495851874,2.35484592059769,0,0,0,0.202182481573316,0,0.421258456238981,0,0,1.05650146756755,0,0,0,1.10273068709225,0.66343897524122,0.876901770507525,0,0,2.02910376962704,0.30982349809975,0.281695602532241,0.143411352204052,0,0.35667105148125,0,0,0,0,0.349934720244983,0.48111056362756,2.68120910214315,0,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0.522355239482415,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372757606696298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0.151230923763239,0,0,0.477890301491107,0.449803112163605,0.310525913752519,0,0,0.521745061811734,0.450772826991655,0.761610424337591,0,0.181848659202559,0,0.464033759878494,0.796191777397232,0,0,0,0,0,0,0.521988583930423,0.226705925512272,0.463044948647668,0.734210113519403,1.61179956973339,0.308801447160972,0.438568099157414,1.23682402162117,1.3503982678964,0.337884881306145,0,0.345430341731199,0.911579868532147,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346576998451015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,1.0007329835313,0.446961094427288,0,0,0,0,0.491467873003018,1.39560233594486,0,0,0,0,0.672325146451775,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,0,0,0.189069634328136,0.221729397462564,0.351339142772504,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0,2.08994966536811,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,1.89853131913626,0.183201743930407,0,0,0,0,0.12663051166458,8.73900593367244,2.0078563452417,0,0.560677600142307,2.1349799145941,0.24666754841716,0,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0,0.245668634623536,0,0,0.741800787835671,0,0,0.336672227908132,0,0,0.438977620880838,1.22595118319608,1.05166641234618,0.340296549480063,3.22901344239952,0.427114777637135,0,0.300091096084402,0.309157587715317,1.28820270022815,0,0.168776332241266,0.389748020644795,0.504867548488229,0.0920498986422993,0,1.06502877754984,0.302256294682921,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,0,0,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,1.44331342025273,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0.93733833986777,0.335964256397719,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0.791951872933429,0,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0.468565659970853,0,0,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,0,0,0,0,0,0,0.248107807818777,0.460385919864187,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0.459257792658427,0,0,0,0.308061348417659,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.765676274967505,0,0,2.83331112147576,0,0.924100740528266,0,2.60979897622522,1.11194531462352,0.715624433709956,0.372158369359667,0.316379424718726,0.38126038784765,0,0,0.636406495851874,2.35484592059769,0,0,0,0.202182481573316,0,0.421258456238981,0,0,1.05650146756755,0,0,0,1.10273068709225,0.66343897524122,0.876901770507525,0,0,2.02910376962704,0.30982349809975,0.281695602532241,0.143411352204052,0,0.35667105148125,0,0,0,0,0.349934720244983,0.48111056362756,2.68120910214315,0,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0.522355239482415,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372757606696298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0.151230923763239,0,0,0.477890301491107,0.449803112163605,0.310525913752519,0,0,0.521745061811734,0.450772826991655,0.761610424337591,0,0.181848659202559,0,0.464033759878494,0.796191777397232,0,0,0,0,0,0,0.521988583930423,0.226705925512272,0.463044948647668,0.734210113519403,1.61179956973339,0.308801447160972,0.438568099157414,1.23682402162117,1.3503982678964,0.337884881306145,0,0.345430341731199,0.911579868532147,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346576998451015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:28857853..28857858,- | |||
}} | }} |
Latest revision as of 21:21, 23 July 2015
Short description: | p@chr11:28857853..28857858, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:28857853..28857858, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.99e-10 | 32 |
fibroblast of tunica adventitia of artery | 2.06e-08 | 4 |
fibroblast of the aortic adventitia | 2.06e-08 | 4 |
mesodermal cell | 1.29e-07 | 121 |
smooth muscle cell | 2.04e-07 | 43 |
smooth muscle myoblast | 2.04e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
artery | 1.24e-15 | 42 |
arterial blood vessel | 1.24e-15 | 42 |
arterial system | 1.24e-15 | 42 |
systemic artery | 5.73e-13 | 33 |
systemic arterial system | 5.73e-13 | 33 |
epithelial tube open at both ends | 5.82e-13 | 59 |
blood vessel | 5.82e-13 | 59 |
blood vasculature | 5.82e-13 | 59 |
vascular cord | 5.82e-13 | 59 |
vessel | 5.45e-11 | 68 |
splanchnic layer of lateral plate mesoderm | 1.99e-10 | 83 |
vasculature | 2.47e-09 | 78 |
vascular system | 2.47e-09 | 78 |
artery wall | 2.06e-08 | 4 |
tunica adventitia of artery | 2.06e-08 | 4 |
adventitia | 2.06e-08 | 4 |
tunica adventitia of blood vessel | 2.06e-08 | 4 |
aorta tunica adventitia | 2.06e-08 | 4 |
aorta wall | 2.06e-08 | 4 |
epithelial tube | 4.62e-08 | 117 |
cardiovascular system | 2.00e-07 | 109 |
circulatory system | 3.60e-07 | 112 |