FFCP PHASE1:Hg19::chr12:30950052..30950087,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:30950052..30950087,- | |||
|description=CAGE_peak_at_chr12:30950052..30950087,- | |description=CAGE_peak_at_chr12:30950052..30950087,- | ||
|id=chr12:30950052..30950087,- | |id=chr12:30950052..30950087,- | ||
|ontology_enrichment_celltype=CL:0000055!3.74e-18!180;CL:0000057!5.26e-15!75;CL:0002620!4.98e-09!23;CL:0002368!7.77e-09!13;CL:0000220!2.29e-08!246;CL:0002321!3.85e-08!248;CL:0000359!4.43e-07!32 | |ontology_enrichment_celltype=CL:0000055!3.74e-18!180;CL:0000057!5.26e-15!75;CL:0002620!4.98e-09!23;CL:0002368!7.77e-09!13;CL:0000220!2.29e-08!246;CL:0002321!3.85e-08!248;CL:0000359!4.43e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002591;8.93e-11;1!CL:0002379;2.38e-10;1!CL:1000306;5.96e-10;4!CL:0002547;5.96e-10;4!CL:0002368;8.97e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,9.84e-11,1;CL:0002379,3.61e-10,1;CL:1000306,5.97e-10,4;CL:0002547,5.97e-10,4;CL:0002368,8.71e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;2.38e-10;1!DOID:3565;2.38e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,3.61e-10,1;DOID:3565,3.61e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.54e-09!83;UBERON:0002329!3.54e-09!83;UBERON:0003077!3.54e-09!83;UBERON:0003059!3.54e-09!83;UBERON:0007282!3.54e-09!83;UBERON:0009618!3.54e-09!83;UBERON:0007285!3.54e-09!83;UBERON:0004872!9.07e-09!84;UBERON:0001981!9.76e-09!60;UBERON:0007500!9.76e-09!60;UBERON:0004537!9.76e-09!60;UBERON:0006965!9.76e-09!60;UBERON:0000475!1.05e-08!365;UBERON:0001637!2.16e-08!42;UBERON:0003509!2.16e-08!42;UBERON:0004572!2.16e-08!42;UBERON:0000486!1.65e-07!82;UBERON:0004290!2.02e-07!70;UBERON:0000119!5.01e-07!312;UBERON:0000483!5.36e-07!309;UBERON:0000025!7.15e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;3.06e-13;3!UBERON:0005382;3.06e-13;3!UBERON:0001874;2.38e-10;1!UBERON:0000369;3.70e-10;4!UBERON:0002435;3.70e-10;4!UBERON:0000204;3.70e-10;4!UBERON:0004797;5.96e-10;4!UBERON:0000415;5.96e-10;4!UBERON:0007240;5.96e-10;4!UBERON:0005742;5.96e-10;4!UBERON:0005734;5.96e-10;4!UBERON:0004664;5.96e-10;4!UBERON:0004663;5.96e-10;4!UBERON:0000947;3.95e-07;21!UBERON:0010191;3.95e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,2.79e-13,3;UBERON:0005382,2.79e-13,3;UBERON:0001874,2.50e-10,1;UBERON:0000369,3.46e-10,4;UBERON:0002435,3.46e-10,4;UBERON:0000204,3.46e-10,4;UBERON:0010082,3.46e-10,4;UBERON:0000415,5.97e-10,4;UBERON:0007240,5.97e-10,4;UBERON:0005742,5.97e-10,4;UBERON:0005734,5.97e-10,4;UBERON:0004664,5.97e-10,4;UBERON:0004663,5.97e-10,4;UBERON:0001637,1.78e-07,42;UBERON:0003509,1.78e-07,42;UBERON:0004572,1.78e-07,42;UBERON:0000947,3.49e-07,21;UBERON:0010191,3.49e-07,21;UBERON:0007500,6.73e-07,59;UBERON:0001981,6.73e-07,59;UBERON:0004537,6.73e-07,59;UBERON:0006965,6.73e-07,59 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0.612002073732759,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,1.83884244895785,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0.379891534993739,1.85372853138506,1.14734648299525,0.354668382198357,0,0,0,0.311211035399766,0.67355336034844,0.490385709340376,0.302714855289863,0,0,0.312160076830321,0.570471821544449,0.149448680551801,0.587172493218824,0.161872944368132,0.140450806702248,0.408308342509787,0.122834317311768,0.206651562351531,0,0.247266929278557,0,0,0.168336113954066,0.500474079487857,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0.538168907066586,0,0.423863802319124,1.50045548042201,0,0.772921620136887,0,1.85653965465393,0.0974370051611986,3.28163906517349,0,0,0,0.302256294682921,0.169560592310488,0,0.272746120590835,0.286804595389004,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0.767309866440312,0,0.256278298511402,0,0.160853921143607,0,0.462629081407967,0,0,1.03850885836724,0.348631135379878,0,0.200506470303285,0.184161977871793,0.68888668898764,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0.165284915360978,0.192190067365106,1.65896526242959,0.2023155617111,0,1.88887408098384,2.7881490806424,0.308033580176089,0,0,0.18532421910392,0.715624433709956,0,0.316379424718726,0,0,0,0,0.78494864019923,0,0.274537029736055,0.117812402345686,0.606547444719948,0,0.842516912477962,0,0.243713489631284,0,0,0.282810863907425,2.26016233240486,0.551365343546124,0,0,0,0,0.405820753925408,2.78841148289775,0.845086807596724,0.143411352204052,0,0.7133421029625,0,0,0,0,0,0.0962221127255121,0.670302275535787,1.08890984861323,0,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22864280839693,0,0,0.890469640183247,0,0,0,0,0,0.306806047506464,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,2.89431452700979,0,0,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0.19351266257817,0.292357268344742,0.246346371159628,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0.288180834308212,0,0,0.14405479798815,0.621262677827163,0,0.407712618220842,0.104602846312333,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0.0787831823072236,0,0,0,0,0,0.408610218334727,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.124980407962107,0,0,1.17632909849086,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0,0,0.457680136793847,0.151230923763239,0.15543720058278,0.887130899937803,0.955780602982214,2.24901556081802,0.310525913752519,0,1.59505028734797,0.521745061811734,0,0,0.406870733204662,0.545545977607678,0.322231671127465,1.39210127963548,0,0,0,0,0,0.192619830407303,0,0.521988583930423,0,0,0,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0.303859956177382,0.414775308455192,0,0,0,0,0,0.211312123358627,0,0,0,0.567515953566836,0,0.139879507719444,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.60511520611056,0,0,0,0,0.202612753855184,1.56215619722769,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,1.41404030924402,0,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0.534434810531121,0,0,0,0,0.829169439458779,0.20686599172379,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0.612002073732759,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,1.83884244895785,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0.379891534993739,1.85372853138506,1.14734648299525,0.354668382198357,0,0,0,0.311211035399766,0.67355336034844,0.490385709340376,0.302714855289863,0,0,0.312160076830321,0.570471821544449,0.149448680551801,0.587172493218824,0.161872944368132,0.140450806702248,0.408308342509787,0.122834317311768,0.206651562351531,0,0.247266929278557,0,0,0.168336113954066,0.500474079487857,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0.538168907066586,0,0.423863802319124,1.50045548042201,0,0.772921620136887,0,1.85653965465393,0.0974370051611986,3.28163906517349,0,0,0,0.302256294682921,0.169560592310488,0,0.272746120590835,0.286804595389004,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0.767309866440312,0,0.256278298511402,0,0.160853921143607,0,0.462629081407967,0,0,1.03850885836724,0.348631135379878,0,0.200506470303285,0.184161977871793,0.68888668898764,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0.165284915360978,0.192190067365106,1.65896526242959,0.2023155617111,0,1.88887408098384,2.7881490806424,0.308033580176089,0,0,0.18532421910392,0.715624433709956,0,0.316379424718726,0,0,0,0,0.78494864019923,0,0.274537029736055,0.117812402345686,0.606547444719948,0,0.842516912477962,0,0.243713489631284,0,0,0.282810863907425,2.26016233240486,0.551365343546124,0,0,0,0,0.405820753925408,2.78841148289775,0.845086807596724,0.143411352204052,0,0.7133421029625,0,0,0,0,0,0.0962221127255121,0.670302275535787,1.08890984861323,0,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22864280839693,0,0,0.890469640183247,0,0,0,0,0,0.306806047506464,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,2.89431452700979,0,0,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0.19351266257817,0.292357268344742,0.246346371159628,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0.288180834308212,0,0,0.14405479798815,0.621262677827163,0,0.407712618220842,0.104602846312333,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0.0787831823072236,0,0,0,0,0,0.408610218334727,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.124980407962107,0,0,1.17632909849086,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0,0,0.457680136793847,0.151230923763239,0.15543720058278,0.887130899937803,0.955780602982214,2.24901556081802,0.310525913752519,0,1.59505028734797,0.521745061811734,0,0,0.406870733204662,0.545545977607678,0.322231671127465,1.39210127963548,0,0,0,0,0,0.192619830407303,0,0.521988583930423,0,0,0,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0.303859956177382,0.414775308455192,0,0,0,0,0,0.211312123358627,0,0,0,0.567515953566836,0,0.139879507719444,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.60511520611056,0,0,0,0,0.202612753855184,1.56215619722769,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,1.41404030924402,0,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0.534434810531121,0,0,0,0,0.829169439458779,0.20686599172379,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0,0,0,0,0 | ||
|short_description=p@chr12:30950052..30950087,- | |short_description=p@chr12:30950052..30950087,- | ||
}} | }} |
Latest revision as of 08:04, 24 July 2015
Short description: | p@chr12:30950052..30950087, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:30950052..30950087, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 9.84e-11 | 1 |
meningothelial cell | 3.61e-10 | 1 |
fibroblast of tunica adventitia of artery | 5.97e-10 | 4 |
fibroblast of the aortic adventitia | 5.97e-10 | 4 |
respiratory epithelial cell | 8.71e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 2.79e-13 | 3 |
dorsal striatum | 2.79e-13 | 3 |
putamen | 2.50e-10 | 1 |
corpus striatum | 3.46e-10 | 4 |
striatum | 3.46e-10 | 4 |
ventral part of telencephalon | 3.46e-10 | 4 |
future corpus striatum | 3.46e-10 | 4 |
artery wall | 5.97e-10 | 4 |
tunica adventitia of artery | 5.97e-10 | 4 |
adventitia | 5.97e-10 | 4 |
tunica adventitia of blood vessel | 5.97e-10 | 4 |
aorta tunica adventitia | 5.97e-10 | 4 |
aorta wall | 5.97e-10 | 4 |
artery | 1.78e-07 | 42 |
arterial blood vessel | 1.78e-07 | 42 |
arterial system | 1.78e-07 | 42 |
aorta | 3.49e-07 | 21 |
aortic system | 3.49e-07 | 21 |
epithelial tube open at both ends | 6.73e-07 | 59 |
blood vessel | 6.73e-07 | 59 |
blood vasculature | 6.73e-07 | 59 |
vascular cord | 6.73e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 3.61e-10 | 1 |
meningioma | 3.61e-10 | 1 |