FFCP PHASE1:Hg19::chr17:48270155..48270188,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:48270155..48270188,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_at_chr17:48270155..48270188,+ | |description=CAGE_peak_at_chr17:48270155..48270188,+ | ||
|id=chr17:48270155..48270188,+ | |id=chr17:48270155..48270188,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.50e-34!180;CL:0000057!1.46e-24!75;CL:0000183!6.41e-14!59;CL:0000048!8.97e-14!430;CL:0000723!7.09e-13!436;CL:0000680!1.35e-12!57;CL:0000056!1.35e-12!57;CL:0000355!1.35e-12!57;CL:0000187!2.32e-12!54;CL:0000034!5.06e-12!444;CL:0002371!2.66e-10!591;CL:0000144!3.03e-10!625;CL:0000393!8.20e-10!60;CL:0000211!8.20e-10!60;CL:0000192!1.71e-09!42;CL:0000514!1.71e-09!42;CL:0002620!2.58e-09!23;CL:0002334!3.35e-09!12;CL:0002320!2.91e-08!365;CL:0000499!6.70e-07!27 | |ontology_enrichment_celltype=CL:0000055!5.50e-34!180;CL:0000057!1.46e-24!75;CL:0000183!6.41e-14!59;CL:0000048!8.97e-14!430;CL:0000723!7.09e-13!436;CL:0000680!1.35e-12!57;CL:0000056!1.35e-12!57;CL:0000355!1.35e-12!57;CL:0000187!2.32e-12!54;CL:0000034!5.06e-12!444;CL:0002371!2.66e-10!591;CL:0000144!3.03e-10!625;CL:0000393!8.20e-10!60;CL:0000211!8.20e-10!60;CL:0000192!1.71e-09!42;CL:0000514!1.71e-09!42;CL:0002620!2.58e-09!23;CL:0002334!3.35e-09!12;CL:0002320!2.91e-08!365;CL:0000499!6.70e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000134;4.85e-12;55!CL:0000048;2.82e-10;58!CL:0000723;4.52e-10;61!CL:0002334;2.75e-09;12!CL:0002320;8.70e-09;188!CL:0000057;1.15e-08;73!CL:0000034;3.72e-08;69!CL:0002569;5.24e-08;6!CL:0000499;7.59e-08;28!CL:0002570;3.55e-07;8!CL:0002620;4.24e-07;23!CL:0000349;4.41e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.67e-22,76;CL:0000048,1.35e-16,427;CL:0000723,7.48e-16,433;CL:0000034,6.75e-15,441;CL:0002320,2.22e-13,361;CL:0000134,3.21e-11,354;CL:0000219,1.67e-09,386;CL:0002334,2.91e-09,12;CL:0002569,5.97e-08,6;CL:0000499,8.15e-08,28;CL:0002620,3.44e-07,23;CL:0002570,3.63e-07,8;CL:0000349,6.33e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.13e-07!14 | |ontology_enrichment_disease=DOID:2394!2.13e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.65e-15!83;UBERON:0002329!5.65e-15!83;UBERON:0003077!5.65e-15!83;UBERON:0003059!5.65e-15!83;UBERON:0007282!5.65e-15!83;UBERON:0009618!5.65e-15!83;UBERON:0007285!5.65e-15!83;UBERON:0001134!1.16e-12!61;UBERON:0002036!1.16e-12!61;UBERON:0003082!1.16e-12!61;UBERON:0004290!2.12e-12!70;UBERON:0002385!2.42e-12!63;UBERON:0001015!2.42e-12!63;UBERON:0000383!2.42e-12!63;UBERON:0005256!5.85e-11!143;UBERON:0000486!2.31e-10!82;UBERON:0001013!2.84e-09!14;UBERON:0002384!1.22e-08!375;UBERON:0002100!4.08e-07!216;UBERON:0002199!5.98e-07!45;UBERON:0002416!5.98e-07!45 | |ontology_enrichment_uberon=UBERON:0000914!5.65e-15!83;UBERON:0002329!5.65e-15!83;UBERON:0003077!5.65e-15!83;UBERON:0003059!5.65e-15!83;UBERON:0007282!5.65e-15!83;UBERON:0009618!5.65e-15!83;UBERON:0007285!5.65e-15!83;UBERON:0001134!1.16e-12!61;UBERON:0002036!1.16e-12!61;UBERON:0003082!1.16e-12!61;UBERON:0004290!2.12e-12!70;UBERON:0002385!2.42e-12!63;UBERON:0001015!2.42e-12!63;UBERON:0000383!2.42e-12!63;UBERON:0005256!5.85e-11!143;UBERON:0000486!2.31e-10!82;UBERON:0001013!2.84e-09!14;UBERON:0002384!1.22e-08!375;UBERON:0002100!4.08e-07!216;UBERON:0002199!5.98e-07!45;UBERON:0002416!5.98e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.13e-09;198!UBERON:0003104;3.25e-09;7!UBERON:0009142;3.25e-09;7!UBERON:0004457;1.20e-08;9!UBERON:0000042;1.20e-08;9!UBERON:0003688;4.12e-08;6!UBERON:0002358;4.12e-08;6!UBERON:0003684;4.12e-08;6!UBERON:0001178;4.12e-08;6!UBERON:0003422;5.24e-08;6!UBERON:0001013;1.33e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.14e-13,371;UBERON:0003688,4.28e-08,6;UBERON:0002358,4.28e-08,6;UBERON:0003684,4.28e-08,6;UBERON:0001178,4.28e-08,6;UBERON:0003422,5.97e-08,6;UBERON:0001013,1.39e-07,14;UBERON:0001134,5.72e-07,62;UBERON:0002036,5.72e-07,62;UBERON:0003082,5.72e-07,62 | |||
|phase1_expression=3.63356758541113,3.63970890614671,4.36958652697511,5.00366491765652,8.93922188854576,6.97870819280295,5.06599756336621,0.631719873426831,0.522371256399677,0.491467873003018,0,0.436882744260345,3.16520373874144,2.10402800032079,1.65698687863958,2.6893005858071,0.602694528023977,0,0.487932798790507,1.84681587115182,3.06001036866379,2.5076377718247,0.286235987131057,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,2.81297636055767,5.78302643815306,2.00535164254356,4.34539556882471,0,5.83961844363163,0.283604451492204,1.33037638477538,1.84453049955565,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4364109856017,1.77282716330412,1.72131935057184,22.0864197976587,2.12801029319014,2.24271040056923,1.06748995729705,7.89336154934912,0,1.48181739276657,0.817309515567294,2.8757911252537,2.30470369792,0.234321431833797,0.624320153660641,0,0.747243402759005,0.23486899728753,0.323745888736263,0,0,0.982674538494144,0,7.12801714369232,13.8469480395992,0,5.74894513452991,0.505008341862199,0.500474079487857,0.277064115484183,1.75591048352335,7.96868269077451,3.90618953157152,0.567160915800105,7.5343646989322,6.83383644219416,5.29829752898905,9.90300617078528,1.33968288009971,8.75977836155139,2.04728541964749,5.23206629947925,1.85130309806277,6.05841058185875,2.94559675655358,1.61646056818812,13.1353549231147,0.403008392910561,2.88253006927829,0,0.272746120590835,0,0,0,0,0.10366105501537,0,0,0,3.21620469096443,0,1.85747171212792,0,0,0,0,0.110293972732394,0,0,0,0,0.38474715694639,0,1.40241773803446,6.173610169971,13.2307840246988,0,0,0,0,0,0.514703430895577,0,0,0,0,0,1.03993478527958,1.44331342025273,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,2.61576041299968,0.95339771567235,2.32689088364,10.7296933755565,2.535908257668,5.05282421511254,2.08014873822732,1.54324424557285,2.83698264046557,1.3321108950805,4.86125178437702,19.5343777940919,4.93944202068461,0.325736184293735,7.46323092359346,3.16780749173372,0,0.871533458600294,0.399891964728228,0,0,0,10.3038687861381,17.2292903751171,0,1.01346914667305,1.43833425785268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,2.00068208423871,2.71265023699736,15.5978146148105,10.8841683166269,10.4083593922397,2.34282829985426,2.40756879782175,0,2.0694614258501,5.97803038681893,1.65932251687533,0.695068915744663,3.72022199179207,10.2943027143257,0,0,0,0.303127571446259,6.65741758041988,5.74541557326393,7.19512642674453,4.14347327877769,11.7877239661891,7.17579235831925,3.58195074346692,12.8683136914886,10.3892646511494,1.3878872442239,3.72879623157567,0.739144404124282,0.519254429183621,3.25389059687886,0,0.200506470303285,0,2.41110341145674,2.36718518408732,3.01586154406675,0,0,0,1.46139224653261,0.105551628892876,0,0,0.215915916102139,0,1.89662506280697,1.50506932156456,0,0,0,0,0,0,0,0,0.103041011647722,0.824125183365091,0.330037999682352,0,0,3.21367859688319,0.386682873168488,0.462145851343933,1.22802939780904,1.10269257987624,1.28904293841928,2.17525040871343,0.767039646744908,8.19094727949984,0,0.576570202095319,0,0,0.929691098594572,18.5739284630078,0,2.15623506123262,0,0,0.9266210955196,0.143124886741991,0.744316738719335,0.316379424718726,2.2875623270859,2.55897791311334,0.42793898803392,0.318203247925937,1.56989728039846,1.43897966066652,7.13796277313742,2.82749765629647,0,0,1.68503382495592,2.92580243453754,2.68084838594413,1.05650146756755,3.54899769660763,6.22183900596336,0,1.65409603063837,1.32687795048244,0.438450885253763,0.578775534266688,0.655894752046633,0,0.92947049429925,1.97186921772569,0.717056761020258,3.92996164052485,0.7133421029625,0,2.74439925886963,8.23237232399755,0.75894634753143,2.0996083214699,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,3.11039587661807,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0.227884111694002,0,0,0.108647371922008,0.31900115973192,1.09917112082235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.82835412028668,0,0,0,0,0,3.62972148145992,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,0.171986032471617,0,0,0,0,0,7.45736444575757,0,0,0,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0,0.577901179803038,0,0,0,1.28929632425987,0,0.279282401272254,0,0,0,0,0,0.53746777989381,5.40449825313605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,0,4.32110745600634,2.28611152076586,0,0,1.19271615249795,0.113312091520126,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.17913448083247,5.60911943633339,3.32883516901568,1.7046270474758,2.51567901752575,3.55924488638614,1.14420034198462,3.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| ||
|short_description=p@chr17:48270155..48270188,+ | |short_description=p@chr17:48270155..48270188,+ | ||
}} | }} |
Latest revision as of 18:36, 25 July 2015
Short description: | p@chr17:48270155..48270188, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:48270155..48270188, + |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.67e-22 | 76 |
multi fate stem cell | 1.35e-16 | 427 |
somatic stem cell | 7.48e-16 | 433 |
stem cell | 6.75e-15 | 441 |
connective tissue cell | 2.22e-13 | 361 |
mesenchymal cell | 3.21e-11 | 354 |
motile cell | 1.67e-09 | 386 |
preadipocyte | 2.91e-09 | 12 |
mesenchymal stem cell of umbilical cord | 5.97e-08 | 6 |
stromal cell | 8.15e-08 | 28 |
skin fibroblast | 3.44e-07 | 23 |
mesenchymal stem cell of adipose | 3.63e-07 | 8 |
extraembryonic cell | 6.33e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.14e-13 | 371 |
omentum | 4.28e-08 | 6 |
peritoneum | 4.28e-08 | 6 |
abdominal cavity | 4.28e-08 | 6 |
visceral peritoneum | 4.28e-08 | 6 |
mesenchyme of umbilical cord | 5.97e-08 | 6 |
adipose tissue | 1.39e-07 | 14 |
skeletal muscle tissue | 5.72e-07 | 62 |
striated muscle tissue | 5.72e-07 | 62 |
myotome | 5.72e-07 | 62 |