Personal tools

FFCP PHASE1:Hg19::chr17:66624280..66624292,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=
|EntrezGene=
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA
|HGNC=
|HGNC=
|TSSclassifier=strong
|UniProt=
|UniProt=
|association_with_transcript=-2bp_to_AL117652_5end
|association_with_transcript=-2bp_to_AL117652_5end
|cluster_id=chr17:66624280..66624292,+
|coexpression_cluster_id=C37
|coexpression_cluster_id=C37
|description=CAGE_peak_3_at_AL117652_5end
|description=CAGE_peak_3_at_AL117652_5end
Line 9: Line 14:
|ontology_enrichment_celltype=CL:0002622!1.29e-08!3
|ontology_enrichment_celltype=CL:0002622!1.29e-08!3
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_development_v019=UBERON:0006298;2.39e-66;1!UBERON:0008801;4.66e-66;1!UBERON:0006601;8.51e-07;82
|ontology_enrichment_development_v019=UBERON:0006298;2.39e-66;1!UBERON:0008801;4.66e-66;1!UBERON:0006601;8.51e-07;82
|ontology_enrichment_disease=DOID:178!3.60e-07!1;DOID:326!3.60e-07!1;DOID:3978!3.60e-07!1;DOID:3394!3.60e-07!1;DOID:5844!3.60e-07!1
|ontology_enrichment_disease=DOID:178!3.60e-07!1;DOID:326!3.60e-07!1;DOID:3978!3.60e-07!1;DOID:3394!3.60e-07!1;DOID:5844!3.60e-07!1
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001829!2.29e-13!2;UBERON:0007023!6.37e-11!115;UBERON:0002530!5.81e-10!59;UBERON:0001044!7.63e-10!6;UBERON:0003293!7.63e-10!6;UBERON:0003294!7.63e-10!6;UBERON:0010047!7.63e-10!6;UBERON:0000167!7.63e-10!6;UBERON:0000166!9.19e-10!21;UBERON:0003408!9.59e-10!10;UBERON:0000161!1.17e-09!35;UBERON:0006947!7.78e-09!3;UBERON:0004054!7.78e-09!3;UBERON:0005156!5.28e-08!59;UBERON:0000990!5.28e-08!59;UBERON:0000344!6.72e-08!12;UBERON:0004175!7.89e-08!25;UBERON:0001736!1.55e-07!1;UBERON:0006298!1.55e-07!1;UBERON:0001831!1.65e-07!1;UBERON:0001567!1.65e-07!1;UBERON:0008801!1.65e-07!1;UBERON:0000998!2.10e-07!1;UBERON:0006868!2.10e-07!1;UBERON:0006834!2.52e-07!1;UBERON:0002372!3.40e-07!1;UBERON:0001961!3.40e-07!1;UBERON:0001744!3.40e-07!1;UBERON:0001735!3.40e-07!1;UBERON:0000165!3.61e-07!28;UBERON:0000930!3.61e-07!28;UBERON:0001301!4.31e-07!1;UBERON:0002038!4.57e-07!1;UBERON:0009661!4.57e-07!1;UBERON:0005904!7.97e-07!4;UBERON:0000997!8.18e-07!1;UBERON:0005056!8.18e-07!1;UBERON:0003343!9.21e-07!4;UBERON:0004785!9.21e-07!4
|ontology_enrichment_uberon=UBERON:0001829!2.29e-13!2;UBERON:0007023!6.37e-11!115;UBERON:0002530!5.81e-10!59;UBERON:0001044!7.63e-10!6;UBERON:0003293!7.63e-10!6;UBERON:0003294!7.63e-10!6;UBERON:0010047!7.63e-10!6;UBERON:0000167!7.63e-10!6;UBERON:0000166!9.19e-10!21;UBERON:0003408!9.59e-10!10;UBERON:0000161!1.17e-09!35;UBERON:0006947!7.78e-09!3;UBERON:0004054!7.78e-09!3;UBERON:0005156!5.28e-08!59;UBERON:0000990!5.28e-08!59;UBERON:0000344!6.72e-08!12;UBERON:0004175!7.89e-08!25;UBERON:0001736!1.55e-07!1;UBERON:0006298!1.55e-07!1;UBERON:0001831!1.65e-07!1;UBERON:0001567!1.65e-07!1;UBERON:0008801!1.65e-07!1;UBERON:0000998!2.10e-07!1;UBERON:0006868!2.10e-07!1;UBERON:0006834!2.52e-07!1;UBERON:0002372!3.40e-07!1;UBERON:0001961!3.40e-07!1;UBERON:0001744!3.40e-07!1;UBERON:0001735!3.40e-07!1;UBERON:0000165!3.61e-07!28;UBERON:0000930!3.61e-07!28;UBERON:0001301!4.31e-07!1;UBERON:0002038!4.57e-07!1;UBERON:0009661!4.57e-07!1;UBERON:0005904!7.97e-07!4;UBERON:0000997!8.18e-07!1;UBERON:0005056!8.18e-07!1;UBERON:0003343!9.21e-07!4;UBERON:0004785!9.21e-07!4
|ontology_enrichment_uberon_v019=UBERON:0001829;1.75e-130;2!UBERON:0001044;1.83e-98;6!UBERON:0003293;1.83e-98;6!UBERON:0003294;1.83e-98;6!UBERON:0010047;1.83e-98;6!UBERON:0003408;1.83e-98;6!UBERON:0000167;1.83e-98;6!UBERON:0001736;2.39e-66;1!UBERON:0001831;4.66e-66;1!UBERON:0001567;4.66e-66;1!UBERON:0001041;4.85e-43;14!UBERON:0004089;7.05e-34;2!UBERON:0000161;4.52e-32;19!UBERON:0000166;4.52e-32;19!UBERON:0000165;3.57e-22;28!UBERON:0002365;1.08e-19;31!UBERON:0002330;1.08e-19;31!UBERON:0004921;1.94e-16;33!UBERON:0007811;5.54e-11;52!UBERON:0000153;3.76e-10;54!UBERON:0000033;4.38e-10;50!UBERON:0001444;3.01e-09;48!UBERON:0001555;3.03e-09;54!UBERON:0002530;7.58e-09;57!UBERON:0002553;7.36e-07;52
|ontology_enrichment_uberon_v019=UBERON:0001829;1.75e-130;2!UBERON:0001044;1.83e-98;6!UBERON:0003293;1.83e-98;6!UBERON:0003294;1.83e-98;6!UBERON:0010047;1.83e-98;6!UBERON:0003408;1.83e-98;6!UBERON:0000167;1.83e-98;6!UBERON:0001736;2.39e-66;1!UBERON:0001831;4.66e-66;1!UBERON:0001567;4.66e-66;1!UBERON:0001041;4.85e-43;14!UBERON:0004089;7.05e-34;2!UBERON:0000161;4.52e-32;19!UBERON:0000166;4.52e-32;19!UBERON:0000165;3.57e-22;28!UBERON:0002365;1.08e-19;31!UBERON:0002330;1.08e-19;31!UBERON:0004921;1.94e-16;33!UBERON:0007811;5.54e-11;52!UBERON:0000153;3.76e-10;54!UBERON:0000033;4.38e-10;50!UBERON:0001444;3.01e-09;48!UBERON:0001555;3.03e-09;54!UBERON:0002530;7.58e-09;57!UBERON:0002553;7.36e-07;52
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.75e-130,2;UBERON:0001044,1.83e-98,6;UBERON:0003293,1.83e-98,6;UBERON:0003294,1.83e-98,6;UBERON:0010047,1.83e-98,6;UBERON:0000167,1.83e-98,6;UBERON:0001736,2.39e-66,1;UBERON:0006298,2.39e-66,1;UBERON:0001831,4.66e-66,1;UBERON:0001567,4.66e-66,1;UBERON:0008801,4.66e-66,1;UBERON:0003408,1.10e-59,10;UBERON:0004089,7.05e-34,2;UBERON:0000166,7.08e-28,22;UBERON:0000165,1.88e-21,29;UBERON:0000930,1.88e-21,29;UBERON:0002365,3.79e-20,31;UBERON:0002330,3.79e-20,31;UBERON:0000161,1.62e-17,36;UBERON:0001444,3.57e-13,49;UBERON:0000033,1.15e-11,56;UBERON:0002530,3.99e-11,59;UBERON:0002553,8.52e-11,61;UBERON:0000153,1.22e-10,62;UBERON:0007811,1.22e-10,62;UBERON:0001004,4.40e-09,74;UBERON:0001041,7.10e-08,87;UBERON:0003102,4.88e-07,99
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.030835435429,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,14.6277301998894,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.25712710128173,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0.36757959813938,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.12729431655633,0.202117188958219,0,0,0.202056159043763,0.215166616178029,0,0,0,0,0,0,0.244482888365733,0,0,0,0
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.030835435429,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,14.6277301998894,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.25712710128173,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0.36757959813938,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.12729431655633,0.202117188958219,0,0,0.202056159043763,0.215166616178029,0,0,0,0,0,0,0.244482888365733,0,0,0,0
|short_description=p3@AL117652
|short_description=p3@AL117652
}}
}}

Latest revision as of 20:18, 25 July 2015

Short description:p3@AL117652
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_3_at_AL117652_5end
Coexpression cluster:C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea
Association with transcript: -2bp_to_AL117652_5end
EntrezGene:NA
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0.0
2.5
5.0
7.5
10.0
12.5
15.0




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr17:66624280..66624292,%2B&oldid=3416224"