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FFCP PHASE1:Hg19::chr19:18900031..18900054,+: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=NA
|EntrezGene=NA
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript
|HGNC=NA
|HGNC=NA
|TSSclassifier=strong
|UniProt=NA
|UniProt=NA
|association_with_transcript=NA
|association_with_transcript=NA
|cluster_id=chr19:18900031..18900054,+
|coexpression_cluster_id=C240
|coexpression_cluster_id=C240
|description=CAGE_peak_at_chr19:18900031..18900054,+
|description=CAGE_peak_at_chr19:18900031..18900054,+
Line 9: Line 14:
|ontology_enrichment_celltype=CL:0000136!1.35e-21!15;CL:0002334!3.57e-21!12;CL:0002580!2.76e-17!3;CL:0000135!4.99e-17!3;CL:0000386!4.99e-17!3;CL:0000388!4.99e-17!3;CL:0002615!5.85e-17!3;CL:0002579!2.08e-16!3;CL:0000153!1.34e-14!9;CL:0000447!1.34e-14!9;CL:0002617!3.73e-12!2;CL:0000499!1.78e-11!27;CL:0000327!2.72e-09!14;CL:0000057!3.39e-09!75;CL:0000667!1.69e-08!6;CL:0000058!1.69e-08!6;CL:0000138!1.69e-08!6;CL:0000214!4.54e-08!3;CL:0000325!1.55e-07!39;CL:0002581!9.67e-07!1
|ontology_enrichment_celltype=CL:0000136!1.35e-21!15;CL:0002334!3.57e-21!12;CL:0002580!2.76e-17!3;CL:0000135!4.99e-17!3;CL:0000386!4.99e-17!3;CL:0000388!4.99e-17!3;CL:0002615!5.85e-17!3;CL:0002579!2.08e-16!3;CL:0000153!1.34e-14!9;CL:0000447!1.34e-14!9;CL:0002617!3.73e-12!2;CL:0000499!1.78e-11!27;CL:0000327!2.72e-09!14;CL:0000057!3.39e-09!75;CL:0000667!1.69e-08!6;CL:0000058!1.69e-08!6;CL:0000138!1.69e-08!6;CL:0000214!4.54e-08!3;CL:0000325!1.55e-07!39;CL:0002581!9.67e-07!1
|ontology_enrichment_celltype_v019=CL:0002334;7.05e-40;12!CL:0002580;2.95e-31;3!CL:0000135;8.58e-31;3!CL:0000388;8.58e-31;3!CL:0002615;1.29e-30;3!CL:0002579;9.10e-30;3!CL:0000136;1.73e-27;13!CL:0002617;1.45e-21;2!CL:0000153;1.01e-17;9!CL:0000447;1.01e-17;9!CL:0000499;1.07e-16;28!CL:0000138;3.17e-15;6!CL:0002581;2.96e-11;1!CL:0002616;2.96e-11;1!CL:0000327;9.82e-11;15
|ontology_enrichment_celltype_v019=CL:0002334;7.05e-40;12!CL:0002580;2.95e-31;3!CL:0000135;8.58e-31;3!CL:0000388;8.58e-31;3!CL:0002615;1.29e-30;3!CL:0002579;9.10e-30;3!CL:0000136;1.73e-27;13!CL:0002617;1.45e-21;2!CL:0000153;1.01e-17;9!CL:0000447;1.01e-17;9!CL:0000499;1.07e-16;28!CL:0000138;3.17e-15;6!CL:0002581;2.96e-11;1!CL:0002616;2.96e-11;1!CL:0000327;9.82e-11;15
|ontology_enrichment_celltype_v019_2=CL:0002334,7.93e-40,12;CL:0002580,2.95e-31,3;CL:0000135,9.03e-31,3;CL:0000388,9.03e-31,3;CL:0002615,1.22e-30,3;CL:0002579,1.36e-29,3;CL:0000136,8.74e-24,15;CL:0002617,1.53e-21,2;CL:0000153,9.05e-18,9;CL:0000447,9.05e-18,9;CL:0000499,1.02e-16,28;CL:0000058,3.01e-15,6;CL:0000138,3.01e-15,6;CL:0000057,1.04e-11,76;CL:0002581,2.42e-11,1;CL:0002616,2.96e-11,1;CL:0000327,9.21e-11,15;CL:0000134,1.48e-08,354;CL:0002320,2.47e-08,361;CL:0000219,1.49e-07,386
|ontology_enrichment_development_v019=
|ontology_enrichment_development_v019=
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
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|ontology_enrichment_uberon=UBERON:0003688!1.41e-31!6;UBERON:0002358!1.41e-31!6;UBERON:0003684!1.41e-31!6;UBERON:0001178!1.41e-31!6;UBERON:0004457!2.83e-27!12;UBERON:0000042!2.83e-27!12;UBERON:0000043!4.99e-17!3;UBERON:0000310!1.04e-13!10;UBERON:0001443!1.95e-12!11;UBERON:0005406!8.83e-12!2;UBERON:0006915!4.54e-08!3;UBERON:0002018!4.54e-08!3;UBERON:0002217!4.54e-08!3;UBERON:0007616!4.54e-08!3;UBERON:0004458!3.43e-07!49
|ontology_enrichment_uberon_v019=UBERON:0003688;1.47e-58;6!UBERON:0002358;1.47e-58;6!UBERON:0003684;1.47e-58;6!UBERON:0001178;1.47e-58;6!UBERON:0004457;5.50e-53;9!UBERON:0000042;5.50e-53;9!UBERON:0007846;8.58e-31;3!UBERON:0000043;8.58e-31;3!UBERON:0007845;8.58e-31;3!UBERON:0000310;1.60e-25;10!UBERON:0001443;3.34e-23;11!UBERON:0005406;9.53e-21;2!UBERON:0004458;2.80e-08;48
|ontology_enrichment_uberon_v019=UBERON:0003688;1.47e-58;6!UBERON:0002358;1.47e-58;6!UBERON:0003684;1.47e-58;6!UBERON:0001178;1.47e-58;6!UBERON:0004457;5.50e-53;9!UBERON:0000042;5.50e-53;9!UBERON:0007846;8.58e-31;3!UBERON:0000043;8.58e-31;3!UBERON:0007845;8.58e-31;3!UBERON:0000310;1.60e-25;10!UBERON:0001443;3.34e-23;11!UBERON:0005406;9.53e-21;2!UBERON:0004458;2.80e-08;48
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.09e-58,6;UBERON:0002358,2.09e-58,6;UBERON:0003684,2.09e-58,6;UBERON:0001178,2.09e-58,6;UBERON:0004457,1.42e-39,12;UBERON:0000042,1.42e-39,12;UBERON:0007846,9.03e-31,3;UBERON:0000043,9.03e-31,3;UBERON:0007845,9.03e-31,3;UBERON:0000310,1.64e-25,10;UBERON:0001443,3.42e-23,11;UBERON:0005406,7.79e-21,2;UBERON:0004458,3.21e-09,49;UBERON:0009569,3.49e-09,112;UBERON:0002384,4.95e-08,371;UBERON:0002323,2.56e-07,46
|phase1_expression=8.53888382571616,4.06790995392868,1.9733616573436,6.00439790118782,3.12872766099101,2.61701557230111,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,0,2.75208386025565,0,1.45990461090791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744467425326359,0,0.0974370051611986,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2254015016441,10.8958001034524,4.77122160536225,1.66580894032411,2.55853624533352,1.28683136914886,2.96836132889982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0.0982490410131212,0,0,3.79993743535795,0.987884678879706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,5.54610754357702,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
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|short_description=p@chr19:18900031..18900054,+
|short_description=p@chr19:18900031..18900054,+
}}
}}

Latest revision as of 05:22, 26 July 2015

Short description:p@chr19:18900031..18900054, +
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_at_chr19:18900031..18900054, +
Coexpression cluster:C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal
Association with transcript: NA
EntrezGene:NA
HGNC: NA
UniProt: NA
Genome view:ZENBU


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CAGE Expression



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  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

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