FFCP PHASE1:Hg19::chr19:48101913..48101916,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:48101913..48101916,- | |||
|description=CAGE_peak_at_chr19:48101913..48101916,- | |description=CAGE_peak_at_chr19:48101913..48101916,- | ||
|id=chr19:48101913..48101916,- | |id=chr19:48101913..48101916,- | ||
|ontology_enrichment_celltype=CL:0002076!2.58e-10!43;CL:0000223!1.67e-08!59;CL:0000066!1.20e-07!254;CL:0002368!5.33e-07!13 | |ontology_enrichment_celltype=CL:0002076!2.58e-10!43;CL:0000223!1.67e-08!59;CL:0000066!1.20e-07!254;CL:0002368!5.33e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002202;2.13e-35;9!CL:0002632;2.13e-35;9!CL:0002328;2.72e-27;3!CL:0000307;2.72e-27;3!CL:0002368;1.11e-24;13!CL:1001319;1.53e-21;1!CL:1000600;1.53e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.63e-35,9;CL:0002632,1.63e-35,9;CL:0002328,1.22e-27,3;CL:0000068,4.07e-27,3;CL:0000069,4.07e-27,3;CL:0000307,4.07e-27,3;CL:0000377,4.07e-27,3;CL:0002368,9.23e-25,13;CL:1001319,1.53e-21,1;CL:1000600,1.53e-21,1;CL:0002076,6.24e-08,42 | |||
|ontology_enrichment_development_v019=CL:0000377;2.72e-27;3 | |||
|ontology_enrichment_disease=DOID:14566!3.56e-14!239;DOID:162!1.16e-13!235;DOID:0050687!2.53e-13!143;DOID:305!4.89e-12!106;DOID:1749!4.80e-08!14;DOID:299!2.28e-07!25 | |ontology_enrichment_disease=DOID:14566!3.56e-14!239;DOID:162!1.16e-13!235;DOID:0050687!2.53e-13!143;DOID:305!4.89e-12!106;DOID:1749!4.80e-08!14;DOID:299!2.28e-07!25 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003343!4.29e-07!4;UBERON:0004785!4.29e-07!4;UBERON:0003100!8.60e-07!41 | |ontology_enrichment_uberon=UBERON:0003343!4.29e-07!4;UBERON:0004785!4.29e-07!4;UBERON:0003100!8.60e-07!41 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.72e-27;3!UBERON:0002031;2.72e-27;3!UBERON:0004645;1.53e-21;1!UBERON:0001256;1.53e-21;1!UBERON:0001259;1.53e-21;1!UBERON:0007196;1.85e-21;15!UBERON:0001558;1.85e-21;15!UBERON:0002185;8.13e-17;5!UBERON:0003126;2.66e-12;7!UBERON:0000485;2.66e-12;7!UBERON:0001005;2.66e-12;7!UBERON:0001255;1.82e-11;2!UBERON:0001556;1.82e-11;2!UBERON:0005178;9.30e-10;34!UBERON:0002224;9.30e-10;34!UBERON:0000072;6.97e-09;37!UBERON:0005181;2.57e-08;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.22e-27,3;UBERON:0002031,1.22e-27,3;UBERON:0004645,1.53e-21,1;UBERON:0001256,1.53e-21,1;UBERON:0001259,1.53e-21,1;UBERON:0007196,1.58e-21,15;UBERON:0001558,1.58e-21,15;UBERON:0002185,5.03e-17,5;UBERON:0003126,3.15e-12,7;UBERON:0001005,3.15e-12,7;UBERON:0001255,1.82e-11,2;UBERON:0001556,1.82e-11,2;UBERON:0000485,6.78e-10,9;UBERON:0005178,1.01e-09,34;UBERON:0002224,1.01e-09,34;UBERON:0005181,1.86e-09,35;UBERON:0008947,9.82e-09,38;UBERON:0003258,9.82e-09,38;UBERON:0000072,4.07e-07,47;UBERON:0005177,5.32e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0.309632246632152,1.83884244895785,0.30120591877825,1.47901604066715,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0.121973706129595,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.447792613514241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,1.64648067356154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.308097234229289,0.307007349452259,0.137836572484531,0.107420244868274,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0.31481234683064,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0.281695602532241,0,0,0,0.709522128141196,0,0,0.379473173765715,0,0.0962221127255121,1.34060455107157,1.08890984861323,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0.455173793141999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.32681539055697,0.41827123283581,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0.189753732724185,0.317873157960757,0.210998064528027,0.489698424477443,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,1.20258735531594,0.207376382794494,0,0,0,0,0.284609546029793,0.138674673013139,0.173559738335131,0.195984794828755,0.69647365264322,0,0,0,0.0730893170861856,0,0,0,0,0.411125773940253,0.397429223405979,0,0,0,0,0.599428828746391,0,0,0,0.14405479798815,0.124252535565433,0.235694034616795,0.271808412147228,0.313808538937,0.305994652908965,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,1.12482367165896,0.606596470166591,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0.400027764663154,0,0.336749488765919,0,0,0,0.260994291965212,0,0,0.244736704506468,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0.655219697692825,0,0.422624246717254,0,0,0,0,0.368211900503681,0,0.622077260032973,0,0,0.943595651135378,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.235939446695481,0.550285795565037,0.924205329202706,0,0.690359926060101,0,0,0.20170506870352,0,0,0.163771917510097,0.887136517302272,0,0,0,0,0,0,0,0.175871244359621,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0,0,0.431855182437243,0,0,0,0,0.521574816907738,0.801711364730253,0,0,0,0,0.118332000730565,0.0852134047591577,0,0.22910686854405,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0.126166424835079,0.109265571963696,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0.784923038064294,0,0,0,0,0,0,0,2.03508171527436,0,0,0.179650404213174,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0.309632246632152,1.83884244895785,0.30120591877825,1.47901604066715,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0.121973706129595,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.447792613514241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,1.64648067356154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.308097234229289,0.307007349452259,0.137836572484531,0.107420244868274,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0.31481234683064,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0.281695602532241,0,0,0,0.709522128141196,0,0,0.379473173765715,0,0.0962221127255121,1.34060455107157,1.08890984861323,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0.455173793141999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.32681539055697,0.41827123283581,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0.189753732724185,0.317873157960757,0.210998064528027,0.489698424477443,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,1.20258735531594,0.207376382794494,0,0,0,0,0.284609546029793,0.138674673013139,0.173559738335131,0.195984794828755,0.69647365264322,0,0,0,0.0730893170861856,0,0,0,0,0.411125773940253,0.397429223405979,0,0,0,0,0.599428828746391,0,0,0,0.14405479798815,0.124252535565433,0.235694034616795,0.271808412147228,0.313808538937,0.305994652908965,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,1.12482367165896,0.606596470166591,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0.400027764663154,0,0.336749488765919,0,0,0,0.260994291965212,0,0,0.244736704506468,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0.655219697692825,0,0.422624246717254,0,0,0,0,0.368211900503681,0,0.622077260032973,0,0,0.943595651135378,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.235939446695481,0.550285795565037,0.924205329202706,0,0.690359926060101,0,0,0.20170506870352,0,0,0.163771917510097,0.887136517302272,0,0,0,0,0,0,0,0.175871244359621,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0,0,0.431855182437243,0,0,0,0,0.521574816907738,0.801711364730253,0,0,0,0,0.118332000730565,0.0852134047591577,0,0.22910686854405,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0.126166424835079,0.109265571963696,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0.784923038064294,0,0,0,0,0,0,0,2.03508171527436,0,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p@chr19:48101913..48101916,- | |short_description=p@chr19:48101913..48101916,- | ||
}} | }} |
Latest revision as of 15:33, 27 July 2015
Short description: | p@chr19:48101913..48101916, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:48101913..48101916, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.63e-35 | 9 |
epithelial cell of lower respiratory tract | 1.63e-35 | 9 |
bronchial epithelial cell | 1.22e-27 | 3 |
duct epithelial cell | 4.07e-27 | 3 |
branched duct epithelial cell | 4.07e-27 | 3 |
tracheal epithelial cell | 4.07e-27 | 3 |
tracheoblast | 4.07e-27 | 3 |
respiratory epithelial cell | 9.23e-25 | 13 |
bladder cell | 1.53e-21 | 1 |
lower urinary tract cell | 1.53e-21 | 1 |
endo-epithelial cell | 6.24e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.22e-27 | 3 |
epithelium of bronchus | 1.22e-27 | 3 |
urinary bladder urothelium | 1.53e-21 | 1 |
wall of urinary bladder | 1.53e-21 | 1 |
mucosa of urinary bladder | 1.53e-21 | 1 |
tracheobronchial tree | 1.58e-21 | 15 |
lower respiratory tract | 1.58e-21 | 15 |
bronchus | 5.03e-17 | 5 |
trachea | 3.15e-12 | 7 |
respiratory airway | 3.15e-12 | 7 |
urinary bladder | 1.82e-11 | 2 |
lower urinary tract | 1.82e-11 | 2 |
simple columnar epithelium | 6.78e-10 | 9 |
thoracic cavity element | 1.01e-09 | 34 |
thoracic cavity | 1.01e-09 | 34 |
thoracic segment organ | 1.86e-09 | 35 |
respiratory primordium | 9.82e-09 | 38 |
endoderm of foregut | 9.82e-09 | 38 |
segment of respiratory tract | 4.07e-07 | 47 |
trunk region element | 5.32e-07 | 101 |