FFCP PHASE1:Hg19::chr1:215139944..215139993,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:215139944..215139993,+ | |||
|description=CAGE_peak_at_chr1:215139944..215139993,+ | |||
|id=chr1:215139944..215139993,+ | |||
|ontology_enrichment_celltype=CL:0000057!4.44e-25!75;CL:0002620!1.84e-15!23;CL:0002334!4.12e-13!12;CL:0000055!1.65e-11!180;CL:1000306!6.97e-09!4;CL:0002547!6.97e-09!4;CL:0002580!7.43e-08!3;CL:0002579!2.13e-07!3;CL:0002615!2.85e-07!3;CL:0000135!3.30e-07!3;CL:0000386!3.30e-07!3;CL:0000388!3.30e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.44e-21;23!CL:0002580;2.12e-17;3!CL:0002617;4.80e-12;2!CL:0002334;2.10e-11;12!CL:0002579;2.52e-08;3!CL:0002615;4.09e-08;3!CL:0000135;9.84e-08;3!CL:0000388;9.84e-08;3!CL:0000057;2.06e-07;73!CL:0000136;7.57e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.38e-24,76;CL:0002620,1.51e-21,23;CL:0002580,2.19e-17,3;CL:0000136,2.17e-12,15;CL:0002617,5.51e-12,2;CL:0002334,2.10e-11,12;CL:0002579,2.48e-08,3;CL:0002615,5.25e-08,3;CL:0000135,7.72e-08,3;CL:0000388,7.72e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!4.49e-11!5;DOID:450!4.49e-11!5;DOID:66!4.49e-11!5;DOID:423!4.49e-11!5;DOID:0080000!4.49e-11!5;DOID:11722!4.49e-11!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.84e-10;5!DOID:450;1.84e-10;5!DOID:66;1.84e-10;5!DOID:423;1.84e-10;5!DOID:0080000;1.84e-10;5!DOID:11722;1.84e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.90e-10,5;DOID:450,1.90e-10,5;DOID:66,1.90e-10,5;DOID:423,1.90e-10,5;DOID:0080000,1.90e-10,5;DOID:11722,1.90e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0003688!5.17e-13!6;UBERON:0002358!5.17e-13!6;UBERON:0003684!5.17e-13!6;UBERON:0001178!5.17e-13!6;UBERON:0002097!7.57e-13!40;UBERON:0002199!3.33e-12!45;UBERON:0002416!3.33e-12!45;UBERON:0004457!2.50e-10!12;UBERON:0000042!2.50e-10!12;UBERON:0000415!6.97e-09!4;UBERON:0007240!6.97e-09!4;UBERON:0005742!6.97e-09!4;UBERON:0005734!6.97e-09!4;UBERON:0004664!6.97e-09!4;UBERON:0004663!6.97e-09!4;UBERON:0000475!9.37e-09!365;UBERON:0000043!3.30e-07!3;UBERON:0001443!5.95e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;8.77e-15;9!UBERON:0000042;8.77e-15;9!UBERON:0003688;9.23e-15;6!UBERON:0002358;9.23e-15;6!UBERON:0003684;9.23e-15;6!UBERON:0001178;9.23e-15;6!UBERON:0000310;1.00e-13;10!UBERON:0001443;1.87e-12;11!UBERON:0002097;1.68e-10;41!UBERON:0007846;9.84e-08;3!UBERON:0000043;9.84e-08;3!UBERON:0007845;9.84e-08;3!UBERON:0002199;1.86e-07;46!UBERON:0002416;1.86e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.16e-14,6;UBERON:0002358,1.16e-14,6;UBERON:0003684,1.16e-14,6;UBERON:0001178,1.16e-14,6;UBERON:0002097,8.45e-14,41;UBERON:0000310,1.08e-13,10;UBERON:0001443,2.01e-12,11;UBERON:0002199,4.55e-12,46;UBERON:0002416,4.55e-12,46;UBERON:0004457,5.67e-11,12;UBERON:0000042,5.67e-11,12;UBERON:0007846,7.72e-08,3;UBERON:0000043,7.72e-08,3;UBERON:0007845,7.72e-08,3 | |||
|phase1_expression=3.08853244759946,6.20891519283851,8.88012745804618,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.886413581652058,33.4995227457444,1.43418310374407,0.354668382198357,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0.718618141816238,0,0,0,1.31693286264251,0.919463387397059,0,0,0.89694817844431,3.41691822109708,23.7363729298709,0.600182192168805,2.78241828943785,0.772921620136887,1.48893485065272,2.36286865137773,2.82567314967476,4.54380793639406,24.301173241567,0,3.55009592516614,1.20902517873168,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,10.2160944167035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.358121926479791,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0.207970861530807,1.60586089917446,0,3.63138386477411,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,8.18755765801964,5.37116906508219,4.2099014164961,7.04765320906355,3.58195074346692,0.64341568457443,0,0,0.355123450626254,0.410635780069046,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,1.85938219718914,3.77774816196768,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0.95460974377781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75380354101505,0,0,0,0,0,0,0,0,0,1.47775344708365,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0,0.933118762985422,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.332787154610557,0.124192805882767,0,0,0,0,0,0,0,0.895528817321244,1.16856654923612,0,0.757612021100357,0.251567901752575,0,0.228840068396924,0.453692771289717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15093557774189,1.6837474438296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0.128458450192919,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0,0,0,0,0.0679697329768317,0.328863867814245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,1.12929087541872,2.3196288626764,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2679671827502,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48798007266701,0.924351257262837,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0.23806443146374,0,0,0,0,0.808468755832877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:215139944..215139993,+ | |||
}} |
Latest revision as of 03:47, 28 July 2015
Short description: | p@chr1:215139944..215139993, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:215139944..215139993, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.38e-24 | 76 |
skin fibroblast | 1.51e-21 | 23 |
preadipocyte of the breast | 2.19e-17 | 3 |
fat cell | 2.17e-12 | 15 |
adipocyte of breast | 5.51e-12 | 2 |
preadipocyte | 2.10e-11 | 12 |
omentum preadipocyte | 2.48e-08 | 3 |
adipocyte of omentum tissue | 5.25e-08 | 3 |
fibrocyte | 7.72e-08 | 3 |
tendon cell | 7.72e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.16e-14 | 6 |
peritoneum | 1.16e-14 | 6 |
abdominal cavity | 1.16e-14 | 6 |
visceral peritoneum | 1.16e-14 | 6 |
skin of body | 8.45e-14 | 41 |
breast | 1.08e-13 | 10 |
chest | 2.01e-12 | 11 |
integument | 4.55e-12 | 46 |
integumental system | 4.55e-12 | 46 |
cavity lining | 5.67e-11 | 12 |
serous membrane | 5.67e-11 | 12 |
dense regular connective tissue | 7.72e-08 | 3 |
tendon | 7.72e-08 | 3 |
regular connective tissue | 7.72e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.90e-10 | 5 |
myotonic disease | 1.90e-10 | 5 |
muscle tissue disease | 1.90e-10 | 5 |
myopathy | 1.90e-10 | 5 |
muscular disease | 1.90e-10 | 5 |
myotonic dystrophy | 1.90e-10 | 5 |