FFCP PHASE1:Hg19::chr20:6902511..6902515,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:6902511..6902515,+ | |||
|coexpression_cluster_id=C513 | |||
|description=CAGE_peak_at_chr20:6902511..6902515,+ | |description=CAGE_peak_at_chr20:6902511..6902515,+ | ||
|id=chr20:6902511..6902515,+ | |id=chr20:6902511..6902515,+ | ||
|ontology_enrichment_celltype=CL:0002076!6.20e-13!43;CL:0000240!8.97e-12!6;CL:0000311!8.97e-12!6;CL:0000079!8.97e-12!6;CL:0000237!8.97e-12!6;CL:0000036!8.97e-12!6;CL:0000357!8.97e-12!6;CL:0000114!8.97e-12!6;CL:0002202!1.23e-11!9;CL:0002632!1.23e-11!9;CL:0000223!6.37e-11!59;CL:0000066!8.53e-11!254;CL:0002368!1.58e-10!13;CL:0000068!6.70e-10!3;CL:0000069!6.70e-10!3;CL:0000307!6.70e-10!3;CL:0000377!6.70e-10!3;CL:0002328!1.09e-09!3;CL:0000312!1.83e-09!5;CL:0002159!2.13e-07!13;CL:0002251!4.27e-07!21;CL:0000076!9.85e-07!62 | |ontology_enrichment_celltype=CL:0002076!6.20e-13!43;CL:0000240!8.97e-12!6;CL:0000311!8.97e-12!6;CL:0000079!8.97e-12!6;CL:0000237!8.97e-12!6;CL:0000036!8.97e-12!6;CL:0000357!8.97e-12!6;CL:0000114!8.97e-12!6;CL:0002202!1.23e-11!9;CL:0002632!1.23e-11!9;CL:0000223!6.37e-11!59;CL:0000066!8.53e-11!254;CL:0002368!1.58e-10!13;CL:0000068!6.70e-10!3;CL:0000069!6.70e-10!3;CL:0000307!6.70e-10!3;CL:0000377!6.70e-10!3;CL:0002328!1.09e-09!3;CL:0000312!1.83e-09!5;CL:0002159!2.13e-07!13;CL:0002251!4.27e-07!21;CL:0000076!9.85e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002328;2.40e-21;3!CL:0002368;3.48e-19;13!CL:0002202;4.66e-16;9!CL:0002632;4.66e-16;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,2.67e-21,3;CL:0002368,4.00e-19,13;CL:0002202,4.90e-16,9;CL:0002632,4.90e-16,9 | |||
|ontology_enrichment_development_v019=UBERON:0008814;6.93e-09;2!UBERON:0010056;6.93e-09;2 | |||
|ontology_enrichment_disease=DOID:1749!6.63e-12!14;DOID:305!7.57e-07!106 | |ontology_enrichment_disease=DOID:1749!6.63e-12!14;DOID:305!7.57e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;8.71e-18;14!DOID:3151;1.93e-16;1!DOID:3149;1.93e-16;1!DOID:3451;6.93e-09;2!DOID:4159;6.93e-09;2!DOID:0060122;6.93e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.99e-18,14;DOID:3151,3.07e-16,1;DOID:3149,3.07e-16,1;DOID:3451,8.74e-09,2;DOID:4159,8.74e-09,2;DOID:0060122,8.74e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0004815!1.09e-09!3;UBERON:0002031!1.09e-09!3;UBERON:0007196!2.04e-09!14;UBERON:0001558!2.04e-09!14;UBERON:0002185!2.42e-07!4;UBERON:0003126!7.31e-07!7;UBERON:0001005!7.31e-07!7 | |ontology_enrichment_uberon=UBERON:0004815!1.09e-09!3;UBERON:0002031!1.09e-09!3;UBERON:0007196!2.04e-09!14;UBERON:0001558!2.04e-09!14;UBERON:0002185!2.42e-07!4;UBERON:0003126!7.31e-07!7;UBERON:0001005!7.31e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.40e-21;3!UBERON:0002031;2.40e-21;3!UBERON:0002185;3.23e-13;5!UBERON:0007196;7.00e-10;15!UBERON:0001558;7.00e-10;15!UBERON:0000485;1.04e-09;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.67e-21,3;UBERON:0002031,2.67e-21,3;UBERON:0002185,3.43e-13,5;UBERON:0007196,7.22e-10,15;UBERON:0001558,7.22e-10,15;UBERON:0000485,9.85e-08,9;UBERON:0000065,4.43e-07,54 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,3.67768489791571,0.30120591877825,1.10926203050036,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573609190778008,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,4.49607013030478,0.402115889646523,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,1.74380363108377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02090169995667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0.670302275535787,11.9780083347455,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0.369254416383208,0,0.179736702294654,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,1.70690172428249,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0.278847488557207,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,2.07564790076435,0.370691816839509,0.522109747527277,0,0,0,0.182454789215666,0.978323094660449,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.391969589657511,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0.321506296930038,0,0,0,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0.988058159489721,0,4.46838880439127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0,0.437062287854782,0.126698501011437,0,0,0.0918948995348449,0,0,0,0,0,0.213233981900981,0,0,0,0.560659312903067,0,0,1.52401723527873,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:6902511..6902515,+ | |short_description=p@chr20:6902511..6902515,+ | ||
}} | }} |
Latest revision as of 16:33, 28 July 2015
Short description: | p@chr20:6902511..6902515, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:6902511..6902515, + |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 2.67e-21 | 3 |
respiratory epithelial cell | 4.00e-19 | 13 |
epithelial cell of tracheobronchial tree | 4.90e-16 | 9 |
epithelial cell of lower respiratory tract | 4.90e-16 | 9 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.67e-21 | 3 |
epithelium of bronchus | 2.67e-21 | 3 |
bronchus | 3.43e-13 | 5 |
tracheobronchial tree | 7.22e-10 | 15 |
lower respiratory tract | 7.22e-10 | 15 |
simple columnar epithelium | 9.85e-08 | 9 |
respiratory tract | 4.43e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.99e-18 | 14 |
skin squamous cell carcinoma | 3.07e-16 | 1 |
keratoacanthoma | 3.07e-16 | 1 |
skin carcinoma | 8.74e-09 | 2 |
skin cancer | 8.74e-09 | 2 |
integumentary system cancer | 8.74e-09 | 2 |