FFCP PHASE1:Hg19::chr2:228743006..228743014,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:228743006..228743014,+ | |||
|coexpression_cluster_id=C1896 | |coexpression_cluster_id=C1896 | ||
|description=CAGE_peak_at_chr2:228743006..228743014,+ | |description=CAGE_peak_at_chr2:228743006..228743014,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002592!3.66e-20!3;CL:0002557!3.66e-15!1;CL:0002494!1.01e-08!16;CL:0002617!2.15e-08!2;CL:0002589!2.87e-08!2;CL:0000359!1.98e-07!32 | |ontology_enrichment_celltype=CL:0002592!3.66e-20!3;CL:0002557!3.66e-15!1;CL:0002494!1.01e-08!16;CL:0002617!2.15e-08!2;CL:0002589!2.87e-08!2;CL:0000359!1.98e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002592;2.39e-66;3!CL:0002494;8.02e-14;16!CL:0000359;4.53e-08;32 | |ontology_enrichment_celltype_v019=CL:0002592;2.39e-66;3!CL:0002494;8.02e-14;16!CL:0000359;4.53e-08;32 | ||
|ontology_enrichment_celltype_v019_2=CL:0002592,2.39e-66,3;CL:0002494,8.02e-14,16;CL:0000359,1.18e-07,32 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:4235!2.06e-15!1 | |ontology_enrichment_disease=DOID:4235!2.06e-15!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003498!3.94e-26!5;UBERON:0005985!3.94e-26!5;UBERON:0001621!3.66e-20!3;UBERON:0001637!5.94e-12!42;UBERON:0003509!5.94e-12!42;UBERON:0004572!5.94e-12!42;UBERON:0004573!7.32e-11!33;UBERON:0004571!7.32e-11!33;UBERON:0000948!8.21e-10!24;UBERON:0005498!8.21e-10!24;UBERON:0004140!8.21e-10!24;UBERON:0009881!8.21e-10!24;UBERON:0004141!8.21e-10!24;UBERON:0003084!8.21e-10!24;UBERON:0007005!8.21e-10!24;UBERON:0004139!8.21e-10!24;UBERON:0004291!8.21e-10!24;UBERON:0007100!9.51e-09!27;UBERON:0001981!2.80e-08!60;UBERON:0007500!2.80e-08!60;UBERON:0004537!2.80e-08!60;UBERON:0006965!2.80e-08!60;UBERON:0001529!2.87e-08!2;UBERON:0007204!2.87e-08!2;UBERON:0007497!3.08e-08!2;UBERON:0003643!3.08e-08!2;UBERON:0003504!3.08e-08!2;UBERON:0003469!3.08e-08!2;UBERON:0003496!3.08e-08!2;UBERON:0004797!3.08e-08!2;UBERON:0002012!3.08e-08!2;UBERON:0008886!3.08e-08!2;UBERON:0007303!3.08e-08!2;UBERON:0002061!3.08e-08!2;UBERON:0005432!3.08e-08!2;UBERON:0004363!3.08e-08!2;UBERON:0004872!8.04e-08!84;UBERON:0000055!3.72e-07!69 | |ontology_enrichment_uberon=UBERON:0003498!3.94e-26!5;UBERON:0005985!3.94e-26!5;UBERON:0001621!3.66e-20!3;UBERON:0001637!5.94e-12!42;UBERON:0003509!5.94e-12!42;UBERON:0004572!5.94e-12!42;UBERON:0004573!7.32e-11!33;UBERON:0004571!7.32e-11!33;UBERON:0000948!8.21e-10!24;UBERON:0005498!8.21e-10!24;UBERON:0004140!8.21e-10!24;UBERON:0009881!8.21e-10!24;UBERON:0004141!8.21e-10!24;UBERON:0003084!8.21e-10!24;UBERON:0007005!8.21e-10!24;UBERON:0004139!8.21e-10!24;UBERON:0004291!8.21e-10!24;UBERON:0007100!9.51e-09!27;UBERON:0001981!2.80e-08!60;UBERON:0007500!2.80e-08!60;UBERON:0004537!2.80e-08!60;UBERON:0006965!2.80e-08!60;UBERON:0001529!2.87e-08!2;UBERON:0007204!2.87e-08!2;UBERON:0007497!3.08e-08!2;UBERON:0003643!3.08e-08!2;UBERON:0003504!3.08e-08!2;UBERON:0003469!3.08e-08!2;UBERON:0003496!3.08e-08!2;UBERON:0004797!3.08e-08!2;UBERON:0002012!3.08e-08!2;UBERON:0008886!3.08e-08!2;UBERON:0007303!3.08e-08!2;UBERON:0002061!3.08e-08!2;UBERON:0005432!3.08e-08!2;UBERON:0004363!3.08e-08!2;UBERON:0004872!8.04e-08!84;UBERON:0000055!3.72e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0003498;2.39e-66;3!UBERON:0005985;2.39e-66;3!UBERON:0001621;2.39e-66;3!UBERON:0000948;1.80e-10;22!UBERON:0007100;2.15e-09;25 | |ontology_enrichment_uberon_v019=UBERON:0003498;2.39e-66;3!UBERON:0005985;2.39e-66;3!UBERON:0001621;2.39e-66;3!UBERON:0000948;1.80e-10;22!UBERON:0007100;2.15e-09;25 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001621,2.39e-66,3;UBERON:0003498,1.48e-40,5;UBERON:0005985,1.48e-40,5;UBERON:0000948,1.01e-09,24;UBERON:0005498,1.01e-09,24;UBERON:0004140,1.01e-09,24;UBERON:0009881,1.01e-09,24;UBERON:0004141,1.01e-09,24;UBERON:0003084,1.01e-09,24;UBERON:0007005,1.01e-09,24;UBERON:0004139,1.01e-09,24;UBERON:0004291,1.01e-09,24;UBERON:0007100,8.32e-09,27;UBERON:0004573,1.82e-07,33;UBERON:0004571,1.82e-07,33 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,3.17020642346017,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,3.17020642346017,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:228743006..228743014,+ | |short_description=p@chr2:228743006..228743014,+ | ||
}} | }} |
Latest revision as of 07:24, 29 July 2015
Short description: | p@chr2:228743006..228743014, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:228743006..228743014, + |
Coexpression cluster: | C1896_Smooth_mesenchymal_heart_tongue_left_Fibroblast_Endothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the coronary artery | 2.39e-66 | 3 |
cardiocyte | 8.02e-14 | 16 |
vascular associated smooth muscle cell | 1.18e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
coronary artery | 2.39e-66 | 3 |
heart blood vessel | 1.48e-40 | 5 |
coronary vessel | 1.48e-40 | 5 |
heart | 1.01e-09 | 24 |
primitive heart tube | 1.01e-09 | 24 |
primary heart field | 1.01e-09 | 24 |
anterior lateral plate mesoderm | 1.01e-09 | 24 |
heart tube | 1.01e-09 | 24 |
heart primordium | 1.01e-09 | 24 |
cardiac mesoderm | 1.01e-09 | 24 |
cardiogenic plate | 1.01e-09 | 24 |
heart rudiment | 1.01e-09 | 24 |
primary circulatory organ | 8.32e-09 | 27 |
systemic artery | 1.82e-07 | 33 |
systemic arterial system | 1.82e-07 | 33 |