FFCP PHASE1:Hg19::chr3:120115780..120115817,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:120115780..120115817,+ to FFCP PHASE1:Hg19::chr3:120115780..120115817,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:120115780..120115817,+ | |||
|coexpression_cluster_id=C605 | |||
|description=CAGE_peak_at_chr3:120115780..120115817,+ | |||
|id=chr3:120115780..120115817,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.89e-37!180;CL:0000057!4.14e-19!75;CL:0000222!1.19e-18!119;CL:0000680!3.17e-17!57;CL:0000056!3.17e-17!57;CL:0000355!3.17e-17!57;CL:0000187!2.90e-16!54;CL:0000183!2.16e-15!59;CL:0000393!6.80e-15!60;CL:0000211!6.80e-15!60;CL:0000192!7.44e-14!42;CL:0000514!7.44e-14!42;CL:0000359!1.13e-11!32;CL:0000144!3.72e-11!625;CL:0002321!2.55e-10!248;CL:0000220!3.01e-10!246;CL:0000548!4.46e-09!679;CL:0000004!4.46e-09!679;CL:0000255!4.46e-09!679;CL:0002371!1.32e-08!591;CL:0000012!1.37e-08!682;CL:0002620!3.43e-08!23;CL:0000499!6.94e-08!27;CL:0002334!1.77e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.09e-10;32!CL:0002334;1.43e-10;12!CL:0000499;8.44e-10;28!CL:0000134;2.14e-09;55!CL:0000057;7.15e-09;73!CL:0000723;9.56e-09;61!CL:0002620;1.16e-08;23!CL:0000048;2.25e-08;58!CL:0002320;6.70e-08;188!CL:0000187;1.34e-07;55!CL:0000192;1.64e-07;43!CL:0000393;4.60e-07;61!CL:0000211;4.60e-07;61!CL:0000349;5.89e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.94e-21,76;CL:0000048,1.14e-17,427;CL:0000723,8.05e-17,433;CL:0000034,9.84e-16,441;CL:0000680,1.69e-14,58;CL:0000056,1.69e-14,58;CL:0000355,1.69e-14,58;CL:0000187,6.07e-14,55;CL:0000393,3.38e-12,61;CL:0000211,3.38e-12,61;CL:0000359,6.54e-11,32;CL:0000222,6.73e-11,121;CL:0002334,1.40e-10,12;CL:0000192,1.78e-10,43;CL:0000514,1.78e-10,43;CL:0000499,1.16e-09,28;CL:0002320,1.20e-08,361;CL:0002620,1.23e-08,23;CL:0000134,2.82e-07,354;CL:0000349,5.85e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.64e-07;43!CL:0000355;8.40e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.41e-17!83;UBERON:0002329!2.41e-17!83;UBERON:0003077!2.41e-17!83;UBERON:0003059!2.41e-17!83;UBERON:0007282!2.41e-17!83;UBERON:0009618!2.41e-17!83;UBERON:0007285!2.41e-17!83;UBERON:0001134!1.07e-15!61;UBERON:0002036!1.07e-15!61;UBERON:0003082!1.07e-15!61;UBERON:0004290!1.08e-15!70;UBERON:0002385!1.52e-15!63;UBERON:0001015!1.52e-15!63;UBERON:0000383!1.52e-15!63;UBERON:0004872!2.87e-15!84;UBERON:0000486!4.22e-15!82;UBERON:0002049!1.58e-14!79;UBERON:0007798!1.58e-14!79;UBERON:0001637!1.74e-12!42;UBERON:0003509!1.74e-12!42;UBERON:0004572!1.74e-12!42;UBERON:0004535!4.66e-12!110;UBERON:0001009!6.12e-12!113;UBERON:0001981!1.52e-11!60;UBERON:0007500!1.52e-11!60;UBERON:0004537!1.52e-11!60;UBERON:0006965!1.52e-11!60;UBERON:0005256!2.70e-11!143;UBERON:0000055!3.66e-11!69;UBERON:0004573!2.76e-10!33;UBERON:0004571!2.76e-10!33;UBERON:0000490!1.24e-09!138;UBERON:0002100!6.14e-09!216;UBERON:0003914!7.02e-09!118;UBERON:0004923!4.38e-08!57;UBERON:0000475!6.39e-07!365;UBERON:0000468!9.74e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.59e-10;9!UBERON:0000042;2.59e-10;9!UBERON:0004905;7.46e-09;8!UBERON:0000982;7.46e-09;8!UBERON:0004770;7.46e-09;8!UBERON:0004573;1.02e-08;33!UBERON:0004571;1.02e-08;33!UBERON:0002384;8.31e-08;198!UBERON:0001637;2.25e-07;42!UBERON:0003509;2.25e-07;42!UBERON:0004572;2.25e-07;42!UBERON:0003688;2.44e-07;6!UBERON:0002358;2.44e-07;6!UBERON:0003684;2.44e-07;6!UBERON:0001178;2.44e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,7.93e-14,62;UBERON:0002036,7.93e-14,62;UBERON:0003082,7.93e-14,62;UBERON:0007524,3.23e-13,73;UBERON:0002385,5.16e-13,64;UBERON:0001015,5.16e-13,64;UBERON:0000383,5.16e-13,64;UBERON:0002329,7.65e-13,71;UBERON:0003059,7.65e-13,71;UBERON:0007282,7.65e-13,71;UBERON:0004290,7.65e-13,71;UBERON:0009618,7.65e-13,71;UBERON:0003077,1.73e-12,72;UBERON:0007285,1.73e-12,72;UBERON:0000486,8.87e-12,83;UBERON:0007503,1.41e-10,78;UBERON:0001637,1.28e-09,42;UBERON:0003509,1.28e-09,42;UBERON:0004572,1.28e-09,42;UBERON:0004573,3.60e-09,33;UBERON:0004571,3.60e-09,33;UBERON:0004905,5.93e-09,8;UBERON:0000982,5.93e-09,8;UBERON:0004770,5.93e-09,8;UBERON:0003104,9.92e-09,160;UBERON:0009142,9.92e-09,160;UBERON:0004872,3.91e-08,83;UBERON:0002384,4.10e-08,371;UBERON:0005256,5.63e-08,122;UBERON:0002199,1.08e-07,46;UBERON:0002416,1.08e-07,46;UBERON:0003688,2.17e-07,6;UBERON:0002358,2.17e-07,6;UBERON:0003684,2.17e-07,6;UBERON:0001178,2.17e-07,6;UBERON:0004457,4.61e-07,12;UBERON:0000042,4.61e-07,12;UBERON:0001013,6.53e-07,14 | |||
|phase1_expression=7.99384868790449,5.1384125733836,3.66481450649525,9.00659685178174,10.2801051718276,17.4467704820074,2.53299878168311,0,2.61185628199839,0.245733936501509,0,0.655324116390517,1.05506791291381,4.70312141248177,6.2965501388304,2.6893005858071,3.61616716814386,1.46062018077475,4.39139518911456,0.61560529038394,0.816002764977012,1.56727360739044,2.0036519099174,0.821246550437305,0.753255837568817,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,3.45228916977532,15.1804444001518,8.02140657017423,7.82171202388448,0,10.2193322763554,0.661743720148475,1.33037638477538,1.40535657109002,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,1.13061588384802,1.25849830862972,1.10047216776027,0.626984899610432,0.775250277507987,0.35576626268671,0,0,0.760272105718513,0.24406205754817,0.735326160691737,0.81014194788176,0.357198913136319,0.22452937262617,0.112611480483322,0,0.949265659568129,0.366403487860815,0,0,0,8.94549513051573,2.5326102332916,0.926864265692532,10.6129549677061,1.41867352879343,2.80338800071154,1.06748995729705,2.96001058100592,0.622422070799533,1.48181739276657,0.817309515567294,0.605429710579726,4.60940739583999,0,0.624320153660641,0,1.64393548606981,0.587172493218824,0.323745888736263,0.421352420106746,0.816616685019573,1.10550885580591,0.413303124703062,1.18800285728205,3.4617370098998,0,0.718618141816238,0.505008341862199,0.125118519871964,0.277064115484183,1.31693286264251,5.82326812018137,3.15499923703853,2.38207584636044,6.63741652048789,7.04739383101272,6.78182083710598,8.70264178644767,2.06105058476878,3.09168648054755,3.90845398296339,3.37552664482532,1.16924406193438,5.55354303337052,5.06274442532646,2.42469085228218,9.23024940543197,1.71278566986988,3.22165125389926,0.193260853163297,0.545492241181669,0,0.121973706129595,0.397589304964456,0,0.207322110030741,0,0.72995471815166,1.56449532329816,1.92972281457866,0,8.35862270457562,5.77503585335668,0.473227200159376,0.505754070234305,0,0.441175890929576,0.435758888184812,0.474541238222193,0.269662616320329,0.392442930250692,0,0,0,2.057870056657,1.47008711385542,0,0,0,0,0,1.54411029268673,0,0,0,0.277765335475589,0,0,0,0.34779121492523,1.40890433082986,0.721832238805369,1.85194205030644,1.33177906564219,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0.205654985406647,0,0.571652865261156,0.112131084345361,0.87192013766656,0.8800594298514,2.45616259939778,0,1.690605505112,2.6593811658487,4.16029747645464,0.257207374262142,0,0,4.86125178437702,0,0,2.28015329005615,3.19852753868291,0.791951872933429,1.80863626235752,0.871533458600294,2.39935178836937,0,0,0,3.83399768786532,5.7430967917057,0,2.46128221334885,1.43833425785268,0.895304816199478,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,1.8403723757871,5.00170521059677,4.34024037919577,11.854339107256,12.8468871933956,11.8276811275451,2.10854546986884,1.50473049863859,2.27407504055985,1.03473071292505,0.664225598535437,2.58116835958384,1.21637060255316,0.195801157462741,0.343143423810856,0.206768026122887,0,0,0.606255142892519,1.66435439510497,1.20956117331872,6.69891081110698,3.83654933220156,7.85848264412606,6.02254001501795,2.55853624533352,4.3430558708774,2.96836132889982,1.07946785661859,2.13074070375753,1.47828880824856,1.55776328755086,3.37010097533882,0,0,0,2.18147451512753,2.36718518408732,1.44236856455367,0,1.15523005656622,0,0,2.21658420675039,0,0.340187410553031,0.215915916102139,0,0,0.501689773854853,1.01950509218015,0,0.223874754722178,0,0,0.256450125116389,0.656029291399411,0.325378394664303,0.103041011647722,0.0915694648183434,0.577566499444116,0,0,6.42735719376638,1.64340221096607,2.46477787383431,1.99554777143968,1.65403886981437,2.0409846524972,2.75531718437034,0.767039646744908,1.69160867728801,0.330569830721956,0.576570202095319,0.255225424989168,0,1.39453664789186,5.98143458978216,0,4.00443654228915,0.532306030317022,0.869932992075073,2.03856641014312,0.286249773483982,1.48863347743867,2.53103539774981,3.0500831027812,0.255897791311334,0.42793898803392,3.18203247925937,3.13979456079692,1.43897966066652,1.64722217841633,0.706874414074119,0.202182481573316,1.58510321173008,4.21258456238981,0.975267478179181,5.36169677188826,7.39551027297288,2.59349831675173,1.83827061539827,1.13008116620243,4.96228809191512,1.32687795048244,1.75380354101505,0.578775534266688,1.9676842561399,0.811641507850816,0.92947049429925,3.09865162785466,0.717056761020258,3.63521451748548,0.7133421029625,0.709522128141196,11.3998123060739,15.4768599691154,0.379473173765715,0.699869440489966,0,0.670302275535787,0,0.376575203107117,0,0,0,0.229723400206959,0,0,0,0,0,0,0.540031437238115,0,0.213648142254946,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.4395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| ||
|short_description=p@chr3:120115780..120115817,+ | |||
}} | }} |
Latest revision as of 14:53, 29 July 2015
Short description: | p@chr3:120115780..120115817, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:120115780..120115817, + |
Coexpression cluster: | C605_hepatic_normal_osteoclastoma_tenocyte_neurofibroma_Ewing_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.94e-21 | 76 |
multi fate stem cell | 1.14e-17 | 427 |
somatic stem cell | 8.05e-17 | 433 |
stem cell | 9.84e-16 | 441 |
muscle precursor cell | 1.69e-14 | 58 |
myoblast | 1.69e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.69e-14 | 58 |
muscle cell | 6.07e-14 | 55 |
electrically responsive cell | 3.38e-12 | 61 |
electrically active cell | 3.38e-12 | 61 |
vascular associated smooth muscle cell | 6.54e-11 | 32 |
mesodermal cell | 6.73e-11 | 121 |
preadipocyte | 1.40e-10 | 12 |
smooth muscle cell | 1.78e-10 | 43 |
smooth muscle myoblast | 1.78e-10 | 43 |
stromal cell | 1.16e-09 | 28 |
connective tissue cell | 1.20e-08 | 361 |
skin fibroblast | 1.23e-08 | 23 |
mesenchymal cell | 2.82e-07 | 354 |
extraembryonic cell | 5.85e-07 | 19 |