FFCP PHASE1:Hg19::chr3:13612408..13612437,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:13612408..13612437,+ | |||
|coexpression_cluster_id=C943 | |coexpression_cluster_id=C943 | ||
|description=CAGE_peak_at_chr3:13612408..13612437,+ | |description=CAGE_peak_at_chr3:13612408..13612437,+ | ||
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|ontology_enrichment_celltype=CL:0000057!1.19e-12!75;CL:0000055!4.39e-12!180;CL:0002334!1.74e-10!12;CL:0000136!2.01e-10!15 | |ontology_enrichment_celltype=CL:0000057!1.19e-12!75;CL:0000055!4.39e-12!180;CL:0002334!1.74e-10!12;CL:0000136!2.01e-10!15 | ||
|ontology_enrichment_celltype_v019=CL:0000136;5.04e-12;13!CL:0002620;9.71e-12;23!CL:0002334;1.29e-09;12!CL:0002615;5.72e-09;3!CL:0002579;1.50e-08;3!CL:0000135;2.42e-08;3!CL:0000388;2.42e-08;3!CL:0002580;4.12e-08;3!CL:0002570;4.10e-07;8 | |ontology_enrichment_celltype_v019=CL:0000136;5.04e-12;13!CL:0002620;9.71e-12;23!CL:0002334;1.29e-09;12!CL:0002615;5.72e-09;3!CL:0002579;1.50e-08;3!CL:0000135;2.42e-08;3!CL:0000388;2.42e-08;3!CL:0002580;4.12e-08;3!CL:0002570;4.10e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.22e-16,76;CL:0000136,1.40e-15,15;CL:0002620,1.79e-11,23;CL:0002334,1.84e-09,12;CL:0002615,5.94e-09,3;CL:0002579,1.87e-08,3;CL:0000135,2.51e-08,3;CL:0000388,2.51e-08,3;CL:0000134,2.98e-08,354;CL:0000048,3.12e-08,427;CL:0002580,6.39e-08,3;CL:0000723,6.61e-08,433;CL:0002320,7.85e-08,361;CL:0000034,1.74e-07,441;CL:0002570,4.25e-07,8;CL:0000219,7.62e-07,386 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;2.11e-07;5!DOID:450;2.11e-07;5!DOID:66;2.11e-07;5!DOID:423;2.11e-07;5!DOID:0080000;2.11e-07;5!DOID:11722;2.11e-07;5 | |ontology_enrichment_disease_v019=DOID:17;2.11e-07;5!DOID:450;2.11e-07;5!DOID:66;2.11e-07;5!DOID:423;2.11e-07;5!DOID:0080000;2.11e-07;5!DOID:11722;2.11e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,4.27e-07,5;DOID:450,4.27e-07,5;DOID:66,4.27e-07,5;DOID:423,4.27e-07,5;DOID:0080000,4.27e-07,5;DOID:11722,4.27e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001013!1.83e-09!14;UBERON:0007100!7.57e-09!27;UBERON:0000948!1.72e-08!24;UBERON:0005498!1.72e-08!24;UBERON:0004140!1.72e-08!24;UBERON:0009881!1.72e-08!24;UBERON:0004141!1.72e-08!24;UBERON:0003084!1.72e-08!24;UBERON:0007005!1.72e-08!24;UBERON:0004139!1.72e-08!24;UBERON:0004291!1.72e-08!24;UBERON:0003688!1.29e-07!6;UBERON:0002358!1.29e-07!6;UBERON:0003684!1.29e-07!6;UBERON:0001178!1.29e-07!6 | |ontology_enrichment_uberon=UBERON:0001013!1.83e-09!14;UBERON:0007100!7.57e-09!27;UBERON:0000948!1.72e-08!24;UBERON:0005498!1.72e-08!24;UBERON:0004140!1.72e-08!24;UBERON:0009881!1.72e-08!24;UBERON:0004141!1.72e-08!24;UBERON:0003084!1.72e-08!24;UBERON:0007005!1.72e-08!24;UBERON:0004139!1.72e-08!24;UBERON:0004291!1.72e-08!24;UBERON:0003688!1.29e-07!6;UBERON:0002358!1.29e-07!6;UBERON:0003684!1.29e-07!6;UBERON:0001178!1.29e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.36e-17;9!UBERON:0000042;2.36e-17;9!UBERON:0003688;7.98e-16;6!UBERON:0002358;7.98e-16;6!UBERON:0003684;7.98e-16;6!UBERON:0001178;7.98e-16;6!UBERON:0001013;9.10e-16;14!UBERON:0002199;1.33e-08;46!UBERON:0002416;1.33e-08;46!UBERON:0007846;2.42e-08;3!UBERON:0000043;2.42e-08;3!UBERON:0007845;2.42e-08;3!UBERON:0002097;3.10e-08;41!UBERON:0004151;7.03e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0004457;2.36e-17;9!UBERON:0000042;2.36e-17;9!UBERON:0003688;7.98e-16;6!UBERON:0002358;7.98e-16;6!UBERON:0003684;7.98e-16;6!UBERON:0001178;7.98e-16;6!UBERON:0001013;9.10e-16;14!UBERON:0002199;1.33e-08;46!UBERON:0002416;1.33e-08;46!UBERON:0007846;2.42e-08;3!UBERON:0000043;2.42e-08;3!UBERON:0007845;2.42e-08;3!UBERON:0002097;3.10e-08;41!UBERON:0004151;7.03e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,9.84e-16,14;UBERON:0003688,1.03e-15,6;UBERON:0002358,1.03e-15,6;UBERON:0003684,1.03e-15,6;UBERON:0001178,1.03e-15,6;UBERON:0004457,1.02e-12,12;UBERON:0000042,1.02e-12,12;UBERON:0002199,1.54e-11,46;UBERON:0002416,1.54e-11,46;UBERON:0002097,3.64e-10,41;UBERON:0004797,2.19e-08,7;UBERON:0007846,2.51e-08,3;UBERON:0000043,2.51e-08,3;UBERON:0007845,2.51e-08,3;UBERON:0004151,8.08e-08,3;UBERON:0002384,8.60e-08,371 | |||
|phase1_expression=6.54042165374004,12.631930909568,6.20199378022273,11.0080628188443,12.5149106439641,6.10636966870258,5.06599756336621,0.631719873426831,2.35067065379855,0.245733936501509,0,0,0,0,0,0.672325146451775,1.20538905604795,0,0,0.369363174230364,0.408001382488506,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.383587685530591,1.0843174571537,0,0.434539556882471,0,0.973269740605272,0.189069634328136,0.221729397462564,0.087834785693126,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.01304409331664,0.264818361626438,10.3261183469573,1.41867352879343,2.24271040056923,0,0.98667019366864,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0.204154171254893,0,0.206651562351531,0,0.989067717114227,0,2.87447256726495,0,0,0,0,0,0.45071417671979,0.226864366320042,1.07633781413317,2.56268866582281,1.05965950579781,0.900273288253207,1.13357782162283,0.772921620136887,2.23340227597908,1.0126579934476,1.75386609290158,3.02920529092937,1.65689817556139,2.10139873864455,2.84007674013291,1.10827308050404,0.339121184620975,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,1.56449532329816,9.00537313470039,0,0,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,1.71072446022705,0,0,0,0,1.30788020649984,0,0.387815147273333,7.15312891703765,0,0.26593811658487,1.04007436911366,0,0,0,0.285955987316295,1.62786481617433,0,0,0.355391948742546,0,4.52159065589379,0,3.39908170018994,0,0,0,0.239624855491583,1.14861935834114,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,1.60586089917446,0.946214490203608,0.117141414992713,0,2.27407504055985,1.03473071292505,0,0,0.260650843404249,0.391602314925481,0.343143423810856,0,0,0,0,0,0.30239029332968,4.21783273291921,1.07423381301644,4.2099014164961,9.99485364194467,2.04682899626681,4.02134802859019,11.8734453155993,0.308419387605311,0.532685175939381,0.246381468041427,0.519254429183621,0.581051892299796,0.120859449591622,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0,0.307007349452259,0.137836572484531,0.214840489736547,0.290033387828457,0.170453254832202,0.267096106940212,0,0,0,0,0,2.20368642781448,0,0.308033580176089,0,0,0,0.143124886741991,0.372158369359667,0.316379424718726,0,0.511795582622668,0.855877976067841,0.636406495851874,1.56989728039846,0.359744915166629,0.274537029736055,0,0.202182481573316,0,0.421258456238981,0,0,1.05650146756755,0,1.1312434556297,4.52032466480971,0,1.32687795048244,0.438450885253763,0,0,0,0,0.281695602532241,0.143411352204052,0.196498082026242,0,0,1.89996871767898,2.96365403663912,0.379473173765715,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,2.19762268907841,0,0,0,0,1.18785872333055,0.921482106297696,0.994147647766298,0,0.111308705022906,0,0,0.597743964753209,0,0,0,0,1.24415835064723,0,0,0,0.986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0.254253650292766,0.472775363535873,0,0,0.173624994933292,0,0,0,0,0,0.438770794307945,0,0,0.461701551022782,0,0,0,0,0,0.0915975934018623,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0.802577647298789,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,0.126373159256976,0,0,0,0.330991955875499,0.313932918407225,0,0,0,0,0,0,1.92199335066233,0,0,0,0,1.35784623083787,0,0.677942222341597,0,0,0,0.391102765469606,0,0.640358984218058,1.9980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,2.23425921017803,0.687481272035051,3.58936512288407,0.199679000498991,0,1.11585728720936,0.201550417460179,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,2.1440859791201,1.32418394073086,0,0,0,0,1.19730191562487,0,0,0.113312091520126,0,0,0,0,0,0,0.427149650270779,0.157204305099666,0,0,0,0,0,0,0.5013797880454,0.306345576763462,0,0,0,0,0,0,0,0.0620964029413835,0.415045904808692,0,0,0,0,0,0,1.04478362020812,0.467426619694449,1.66441758450784,0,0.251567901752575,1.77962244319307,1.83072054717539,1.66354016139563,0.466311601748341,0.443565449968902,0,0,0,0.829412415681711,0.53168342911599,0,1.80309130796662,1.14241563650639,0.406870733204662,0,0.214821114084977,0.464033759878494,0,0,2.40376993627955,1.34699795506368,0,0.192619830407303,0.214441591374926,0,0,0,0.244736704506468,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0.550285795565037,0,0,0,0,0.150420656698515,0,0,0.261906694481422,0,0,0,0,0,0,0,0,1.98484471355718,0,0,0,0.336283722218824,0,0,0.443511850813194,0,0,0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| ||
|short_description=p@chr3:13612408..13612437,+ | |short_description=p@chr3:13612408..13612437,+ | ||
}} | }} |
Latest revision as of 16:10, 29 July 2015
Short description: | p@chr3:13612408..13612437, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:13612408..13612437, + |
Coexpression cluster: | C943_Mesenchymal_Preadipocyte_Fibroblast_Adipocyte_Synoviocyte_Hair_Mesothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.22e-16 | 76 |
fat cell | 1.40e-15 | 15 |
skin fibroblast | 1.79e-11 | 23 |
preadipocyte | 1.84e-09 | 12 |
adipocyte of omentum tissue | 5.94e-09 | 3 |
omentum preadipocyte | 1.87e-08 | 3 |
fibrocyte | 2.51e-08 | 3 |
tendon cell | 2.51e-08 | 3 |
mesenchymal cell | 2.98e-08 | 354 |
multi fate stem cell | 3.12e-08 | 427 |
preadipocyte of the breast | 6.39e-08 | 3 |
somatic stem cell | 6.61e-08 | 433 |
connective tissue cell | 7.85e-08 | 361 |
stem cell | 1.74e-07 | 441 |
mesenchymal stem cell of adipose | 4.25e-07 | 8 |
motile cell | 7.62e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 9.84e-16 | 14 |
omentum | 1.03e-15 | 6 |
peritoneum | 1.03e-15 | 6 |
abdominal cavity | 1.03e-15 | 6 |
visceral peritoneum | 1.03e-15 | 6 |
cavity lining | 1.02e-12 | 12 |
serous membrane | 1.02e-12 | 12 |
integument | 1.54e-11 | 46 |
integumental system | 1.54e-11 | 46 |
skin of body | 3.64e-10 | 41 |
blood vessel layer | 2.19e-08 | 7 |
dense regular connective tissue | 2.51e-08 | 3 |
tendon | 2.51e-08 | 3 |
regular connective tissue | 2.51e-08 | 3 |
cardiac chamber | 8.08e-08 | 3 |
connective tissue | 8.60e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.27e-07 | 5 |
myotonic disease | 4.27e-07 | 5 |
muscle tissue disease | 4.27e-07 | 5 |
myopathy | 4.27e-07 | 5 |
muscular disease | 4.27e-07 | 5 |
myotonic dystrophy | 4.27e-07 | 5 |