FFCP PHASE1:Hg19::chr5:133485552..133485556,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:133485552..133485556,+ | |||
|coexpression_cluster_id=C1121 | |coexpression_cluster_id=C1121 | ||
|description=CAGE_peak_at_chr5:133485552..133485556,+ | |description=CAGE_peak_at_chr5:133485552..133485556,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000838!2.35e-24!52;CL:0000542!1.28e-23!53;CL:0000051!1.28e-23!53;CL:0000084!4.48e-19!25;CL:0000827!4.48e-19!25;CL:0000791!9.23e-19!18;CL:0000789!9.23e-19!18;CL:0002420!9.23e-19!18;CL:0002419!9.23e-19!18;CL:0000790!9.23e-19!18;CL:0000625!5.82e-14!11;CL:0002087!5.33e-11!119;CL:0000738!3.68e-10!140;CL:0002031!6.27e-08!124;CL:0000624!6.36e-08!6 | |ontology_enrichment_celltype=CL:0000838!2.35e-24!52;CL:0000542!1.28e-23!53;CL:0000051!1.28e-23!53;CL:0000084!4.48e-19!25;CL:0000827!4.48e-19!25;CL:0000791!9.23e-19!18;CL:0000789!9.23e-19!18;CL:0002420!9.23e-19!18;CL:0002419!9.23e-19!18;CL:0000790!9.23e-19!18;CL:0000625!5.82e-14!11;CL:0002087!5.33e-11!119;CL:0000738!3.68e-10!140;CL:0002031!6.27e-08!124;CL:0000624!6.36e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.66e-43;18!CL:0000789;1.66e-43;18!CL:0002419;1.66e-43;18!CL:0000084;2.50e-39;25!CL:0000625;5.18e-39;11!CL:0000542;2.30e-15;53!CL:0000623;4.16e-12;3!CL:0000226;6.03e-12;3!CL:0000842;6.03e-12;3!CL:0000624;2.17e-10;6 | |ontology_enrichment_celltype_v019=CL:0000791;1.66e-43;18!CL:0000789;1.66e-43;18!CL:0002419;1.66e-43;18!CL:0000084;2.50e-39;25!CL:0000625;5.18e-39;11!CL:0000542;2.30e-15;53!CL:0000623;4.16e-12;3!CL:0000226;6.03e-12;3!CL:0000842;6.03e-12;3!CL:0000624;2.17e-10;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.25e-44,18;CL:0000789,8.25e-44,18;CL:0002420,8.25e-44,18;CL:0002419,8.25e-44,18;CL:0000790,8.25e-44,18;CL:0000084,1.63e-39,25;CL:0000827,1.63e-39,25;CL:0000625,3.11e-39,11;CL:0000838,2.14e-29,52;CL:0000542,9.84e-29,53;CL:0000051,9.84e-29,53;CL:0000738,6.14e-17,136;CL:0002087,1.34e-16,115;CL:0000037,2.41e-12,168;CL:0000623,3.86e-12,3;CL:0000825,3.86e-12,3;CL:0000226,6.75e-12,3;CL:0000842,6.75e-12,3;CL:0002031,1.08e-11,120;CL:0000988,2.33e-11,177;CL:0000624,1.74e-10,6;CL:0002032,5.36e-09,161;CL:0000837,5.36e-09,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.66e-43;18!CL:0000051;2.30e-15;53 | |ontology_enrichment_development_v019=CL:0000790;1.66e-43;18!CL:0000051;2.30e-15;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!8.04e-14!15;UBERON:0000179!8.04e-14!15;UBERON:0000463!8.04e-14!15 | |ontology_enrichment_uberon=UBERON:0000178!8.04e-14!15;UBERON:0000179!8.04e-14!15;UBERON:0000463!8.04e-14!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.66e-31;15!UBERON:0000179;2.66e-31;15!UBERON:0000463;2.66e-31;15!UBERON:0002390;1.00e-12;32!UBERON:0002193;1.17e-08;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;2.66e-31;15!UBERON:0000179;2.66e-31;15!UBERON:0000463;2.66e-31;15!UBERON:0002390;1.00e-12;32!UBERON:0002193;1.17e-08;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.84e-31,15;UBERON:0000179,3.84e-31,15;UBERON:0000463,3.84e-31,15 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0.157421562627358,0,1.15148819429164,0.154816123316076,0,0,0,0,0.284338464974843,0,0,1.40381113229099,2.38711957787437,0.223915474239924,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0.889509253863555,0,0.400395987036012,0.574752439954483,0,0,0.569212969109448,3.52342313622563,1.91136614062614,0,0,0,6.68813218387032,9.82526906872912,10.896879446974,0,1.95553359980154,5.20792586308207,11.6896037044747,0.111410456885174,0.883817722424512,1.55073726208535,2.16643091012012,0.640456598628376,0.650296737799391,5.42645085192131,5.25065033793112,1.15921234294021,5.93146252648242,13.1095005763959,12.5442628565972,0.113309342697566,0.383220493601921,3.09264700934367,4.04831507231205,7.00843911513013,3.25541726928209,3.8018081777935,2.55977702432214,1.66382594500744,3.74792179657038,4.49876778883632,2.46338399076314,3.83052812126992,10.9650480271238,12.7445475416863,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0.174129737299267,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2170608771714,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,2.75843064282698,8.19384784466166,6.03212270514817,0,0,0,0,0,0,2.99161459204025,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,4.54889657470352,6.68714022537712,2.13455115606889,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0,0.164254312027618,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,1.52927441428475,1.70894156152249,2.1440859791201,1.64544909234478,1.29694662238543,1.08006287447623,3.17250070517708,0,0,0,0,0,9.67529069538432,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.146508179271894,0.121360521749513,0,1.13654458722565,0,0,0,0,0,0.333926115068718,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0.0898683511473268,0,0,0.197286811273867,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0.227586896570999,0.254253650292766,0,0.344743373241465,0,1.38899995946634,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0,0,2.04386596391473,0,0,0.225595660617181,0,0,0,0,0,0.163232808159148,0.141353071433941,0.432777279484182,0,0.0884575645033392,0.611030144933625,0.296521128680622,0.123563938946503,0,0,0,0,0,0,0.728341138602278,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0.277349346026277,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0.397429223405979,0.0633107959558787,0.195551382734803,0.160317640503067,0,0,0,0,0,0.288109595976299,0,0,0.135904206073614,0.418411385249333,0.305994652908965,0.288950589901519,0,0,0,0,0.788662062837943,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.492137407573744,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0.106787412567695,0,0,2.97699613087171,0,0,0,0,0,0,0,0,0,0,0.250381861413,0.573409195690071,0.332787154610557,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0.368211900503681,0,0,0.255788742607303,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0.394308725006267,0,0,0,0,0,0,0,0.252071696221718,0,0,1.42769420259154,0,0.11796972334774,0,0,0,0,0.795664888465099,0,0,0,0,0,0.295712172434091,0,0,0.413373593002368,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0.460935950223117,0,0,0,0.236387681767936,0.111231401892069,0,0.157115589916002,0,0,0,0,0.0714765441766563,0.94808167039636,0,0.173858272302579,0,0,0.17071847709395,0,0.430227358820278,0.118332000730565,0,0,0,0,0,0.223710863595585,0.196300467230486,0.121917924982269,0,0,0,0,0,0,0,0.11294608203896,0.109940516745429,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,0.299823467774787,0,0,0,0,0.458729283404541,0,0.157771562193185,0,0,0,0,0,0,0,0.109265571963696,0.126698501011437,0.101988829741982,0,0,0,0,0,0,0,0,0.23806443146374,0.581300188524055,0.434523000071005,0.112131862580613,0.0636471582781649,0.202117188958219,0,0,0.471464371102113,0,0,0,0,0,0.0898252021065869,0,0,0,0,0.603821380773079,0.961705476909699 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0.157421562627358,0,1.15148819429164,0.154816123316076,0,0,0,0,0.284338464974843,0,0,1.40381113229099,2.38711957787437,0.223915474239924,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0.889509253863555,0,0.400395987036012,0.574752439954483,0,0,0.569212969109448,3.52342313622563,1.91136614062614,0,0,0,6.68813218387032,9.82526906872912,10.896879446974,0,1.95553359980154,5.20792586308207,11.6896037044747,0.111410456885174,0.883817722424512,1.55073726208535,2.16643091012012,0.640456598628376,0.650296737799391,5.42645085192131,5.25065033793112,1.15921234294021,5.93146252648242,13.1095005763959,12.5442628565972,0.113309342697566,0.383220493601921,3.09264700934367,4.04831507231205,7.00843911513013,3.25541726928209,3.8018081777935,2.55977702432214,1.66382594500744,3.74792179657038,4.49876778883632,2.46338399076314,3.83052812126992,10.9650480271238,12.7445475416863,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0.174129737299267,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2170608771714,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,2.75843064282698,8.19384784466166,6.03212270514817,0,0,0,0,0,0,2.99161459204025,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,4.54889657470352,6.68714022537712,2.13455115606889,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0,0.164254312027618,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,1.52927441428475,1.70894156152249,2.1440859791201,1.64544909234478,1.29694662238543,1.08006287447623,3.17250070517708,0,0,0,0,0,9.67529069538432,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.146508179271894,0.121360521749513,0,1.13654458722565,0,0,0,0,0,0.333926115068718,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0.0898683511473268,0,0,0.197286811273867,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0.227586896570999,0.254253650292766,0,0.344743373241465,0,1.38899995946634,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0,0,2.04386596391473,0,0,0.225595660617181,0,0,0,0,0,0.163232808159148,0.141353071433941,0.432777279484182,0,0.0884575645033392,0.611030144933625,0.296521128680622,0.123563938946503,0,0,0,0,0,0,0.728341138602278,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0.277349346026277,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0.397429223405979,0.0633107959558787,0.195551382734803,0.160317640503067,0,0,0,0,0,0.288109595976299,0,0,0.135904206073614,0.418411385249333,0.305994652908965,0.288950589901519,0,0,0,0,0.788662062837943,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.492137407573744,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0.106787412567695,0,0,2.97699613087171,0,0,0,0,0,0,0,0,0,0,0.250381861413,0.573409195690071,0.332787154610557,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0.368211900503681,0,0,0.255788742607303,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0.394308725006267,0,0,0,0,0,0,0,0.252071696221718,0,0,1.42769420259154,0,0.11796972334774,0,0,0,0,0.795664888465099,0,0,0,0,0,0.295712172434091,0,0,0.413373593002368,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0.460935950223117,0,0,0,0.236387681767936,0.111231401892069,0,0.157115589916002,0,0,0,0,0.0714765441766563,0.94808167039636,0,0.173858272302579,0,0,0.17071847709395,0,0.430227358820278,0.118332000730565,0,0,0,0,0,0.223710863595585,0.196300467230486,0.121917924982269,0,0,0,0,0,0,0,0.11294608203896,0.109940516745429,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,0.299823467774787,0,0,0,0,0.458729283404541,0,0.157771562193185,0,0,0,0,0,0,0,0.109265571963696,0.126698501011437,0.101988829741982,0,0,0,0,0,0,0,0,0.23806443146374,0.581300188524055,0.434523000071005,0.112131862580613,0.0636471582781649,0.202117188958219,0,0,0.471464371102113,0,0,0,0,0,0.0898252021065869,0,0,0,0,0.603821380773079,0.961705476909699 | ||
|short_description=p@chr5:133485552..133485556,+ | |short_description=p@chr5:133485552..133485556,+ | ||
}} | }} |
Latest revision as of 09:46, 30 July 2015
Short description: | p@chr5:133485552..133485556, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:133485552..133485556, + |
Coexpression cluster: | C1121_Hodgkin_CD4_acute_CD8_thymus_Natural_chronic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.25e-44 | 18 |
alpha-beta T cell | 8.25e-44 | 18 |
immature T cell | 8.25e-44 | 18 |
mature T cell | 8.25e-44 | 18 |
immature alpha-beta T cell | 8.25e-44 | 18 |
T cell | 1.63e-39 | 25 |
pro-T cell | 1.63e-39 | 25 |
CD8-positive, alpha-beta T cell | 3.11e-39 | 11 |
lymphoid lineage restricted progenitor cell | 2.14e-29 | 52 |
lymphocyte | 9.84e-29 | 53 |
common lymphoid progenitor | 9.84e-29 | 53 |
leukocyte | 6.14e-17 | 136 |
nongranular leukocyte | 1.34e-16 | 115 |
hematopoietic stem cell | 2.41e-12 | 168 |
natural killer cell | 3.86e-12 | 3 |
pro-NK cell | 3.86e-12 | 3 |
single nucleate cell | 6.75e-12 | 3 |
mononuclear cell | 6.75e-12 | 3 |
hematopoietic lineage restricted progenitor cell | 1.08e-11 | 120 |
hematopoietic cell | 2.33e-11 | 177 |
CD4-positive, alpha-beta T cell | 1.74e-10 | 6 |
hematopoietic oligopotent progenitor cell | 5.36e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.36e-09 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 3.84e-31 | 15 |
haemolymphatic fluid | 3.84e-31 | 15 |
organism substance | 3.84e-31 | 15 |