FFCP PHASE1:Hg19::chr5:133485552..133485556,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:133485552..133485556,+
|short_description=p@chr5:133485552..133485556,+
|description=CAGE_peak_at_chr5:133485552..133485556,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:133485552..133485556,+ | |||
|coexpression_cluster_id=C1121 | |||
|description=CAGE_peak_at_chr5:133485552..133485556,+ | |||
|id=chr5:133485552..133485556,+ | |||
|ontology_enrichment_celltype=CL:0000838!2.35e-24!52;CL:0000542!1.28e-23!53;CL:0000051!1.28e-23!53;CL:0000084!4.48e-19!25;CL:0000827!4.48e-19!25;CL:0000791!9.23e-19!18;CL:0000789!9.23e-19!18;CL:0002420!9.23e-19!18;CL:0002419!9.23e-19!18;CL:0000790!9.23e-19!18;CL:0000625!5.82e-14!11;CL:0002087!5.33e-11!119;CL:0000738!3.68e-10!140;CL:0002031!6.27e-08!124;CL:0000624!6.36e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.66e-43;18!CL:0000789;1.66e-43;18!CL:0002419;1.66e-43;18!CL:0000084;2.50e-39;25!CL:0000625;5.18e-39;11!CL:0000542;2.30e-15;53!CL:0000623;4.16e-12;3!CL:0000226;6.03e-12;3!CL:0000842;6.03e-12;3!CL:0000624;2.17e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.25e-44,18;CL:0000789,8.25e-44,18;CL:0002420,8.25e-44,18;CL:0002419,8.25e-44,18;CL:0000790,8.25e-44,18;CL:0000084,1.63e-39,25;CL:0000827,1.63e-39,25;CL:0000625,3.11e-39,11;CL:0000838,2.14e-29,52;CL:0000542,9.84e-29,53;CL:0000051,9.84e-29,53;CL:0000738,6.14e-17,136;CL:0002087,1.34e-16,115;CL:0000037,2.41e-12,168;CL:0000623,3.86e-12,3;CL:0000825,3.86e-12,3;CL:0000226,6.75e-12,3;CL:0000842,6.75e-12,3;CL:0002031,1.08e-11,120;CL:0000988,2.33e-11,177;CL:0000624,1.74e-10,6;CL:0002032,5.36e-09,161;CL:0000837,5.36e-09,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.66e-43;18!CL:0000051;2.30e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!8.04e-14!15;UBERON:0000179!8.04e-14!15;UBERON:0000463!8.04e-14!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.66e-31;15!UBERON:0000179;2.66e-31;15!UBERON:0000463;2.66e-31;15!UBERON:0002390;1.00e-12;32!UBERON:0002193;1.17e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.84e-31,15;UBERON:0000179,3.84e-31,15;UBERON:0000463,3.84e-31,15 | |||
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| ||
|short_description=p@chr5:133485552..133485556,+ | |||
}} | }} |
Latest revision as of 09:46, 30 July 2015
Short description: | p@chr5:133485552..133485556, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:133485552..133485556, + |
Coexpression cluster: | C1121_Hodgkin_CD4_acute_CD8_thymus_Natural_chronic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.25e-44 | 18 |
alpha-beta T cell | 8.25e-44 | 18 |
immature T cell | 8.25e-44 | 18 |
mature T cell | 8.25e-44 | 18 |
immature alpha-beta T cell | 8.25e-44 | 18 |
T cell | 1.63e-39 | 25 |
pro-T cell | 1.63e-39 | 25 |
CD8-positive, alpha-beta T cell | 3.11e-39 | 11 |
lymphoid lineage restricted progenitor cell | 2.14e-29 | 52 |
lymphocyte | 9.84e-29 | 53 |
common lymphoid progenitor | 9.84e-29 | 53 |
leukocyte | 6.14e-17 | 136 |
nongranular leukocyte | 1.34e-16 | 115 |
hematopoietic stem cell | 2.41e-12 | 168 |
natural killer cell | 3.86e-12 | 3 |
pro-NK cell | 3.86e-12 | 3 |
single nucleate cell | 6.75e-12 | 3 |
mononuclear cell | 6.75e-12 | 3 |
hematopoietic lineage restricted progenitor cell | 1.08e-11 | 120 |
hematopoietic cell | 2.33e-11 | 177 |
CD4-positive, alpha-beta T cell | 1.74e-10 | 6 |
hematopoietic oligopotent progenitor cell | 5.36e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.36e-09 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 3.84e-31 | 15 |
haemolymphatic fluid | 3.84e-31 | 15 |
organism substance | 3.84e-31 | 15 |