FFCP PHASE1:Hg19::chr5:173907020..173907027,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:173907020..173907027,+ | |||
|coexpression_cluster_id=C1953 | |coexpression_cluster_id=C1953 | ||
|description=CAGE_peak_at_chr5:173907020..173907027,+ | |description=CAGE_peak_at_chr5:173907020..173907027,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!8.16e-13!254;CL:0000223!1.71e-08!59;CL:0002076!1.74e-07!43 | |ontology_enrichment_celltype=CL:0000066!8.16e-13!254;CL:0000223!1.71e-08!59;CL:0002076!1.74e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002231;1.19e-07;3!CL:0002178;1.19e-07;3 | |ontology_enrichment_celltype_v019=CL:0002231;1.19e-07;3!CL:0002178;1.19e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002178,9.40e-08,3;CL:0002231,2.11e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003104;2.85e-09;31!UBERON:0006242;6.40e-07;1 | |ontology_enrichment_development_v019=UBERON:0003104;2.85e-09;31!UBERON:0006242;6.40e-07;1 | ||
|ontology_enrichment_disease=DOID:305!1.03e-14!106;DOID:0050687!3.95e-10!143 | |ontology_enrichment_disease=DOID:305!1.03e-14!106;DOID:0050687!3.95e-10!143 | ||
|ontology_enrichment_disease_v019=DOID:3493;1.31e-11;2!DOID:299;6.15e-07;25 | |ontology_enrichment_disease_v019=DOID:3493;1.31e-11;2!DOID:299;6.15e-07;25 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,1.35e-11,2;DOID:299,4.83e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004921!3.10e-11!129;UBERON:0004185!3.10e-11!129;UBERON:0001007!7.50e-11!155;UBERON:0001555!7.50e-11!155;UBERON:0007026!7.50e-11!155;UBERON:0004119!2.29e-10!169;UBERON:0000925!2.29e-10!169;UBERON:0006595!2.29e-10!169;UBERON:0000077!1.23e-09!130;UBERON:0001041!1.21e-08!98;UBERON:0001048!8.43e-08!168;UBERON:0000481!1.42e-07!347;UBERON:0001004!3.84e-07!72 | |ontology_enrichment_uberon=UBERON:0004921!3.10e-11!129;UBERON:0004185!3.10e-11!129;UBERON:0001007!7.50e-11!155;UBERON:0001555!7.50e-11!155;UBERON:0007026!7.50e-11!155;UBERON:0004119!2.29e-10!169;UBERON:0000925!2.29e-10!169;UBERON:0006595!2.29e-10!169;UBERON:0000077!1.23e-09!130;UBERON:0001041!1.21e-08!98;UBERON:0001048!8.43e-08!168;UBERON:0000481!1.42e-07!347;UBERON:0001004!3.84e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.84e-13;22!UBERON:0004921;2.44e-12;33!UBERON:0005090;4.71e-11;2!UBERON:0001630;4.71e-11;2!UBERON:0000945;5.43e-10;5!UBERON:0010039;5.43e-10;5!UBERON:0001155;1.68e-09;9!UBERON:0001041;3.18e-09;14!UBERON:0000059;8.72e-08;11!UBERON:0000160;3.66e-07;17 | |ontology_enrichment_uberon_v019=UBERON:0005409;1.84e-13;22!UBERON:0004921;2.44e-12;33!UBERON:0005090;4.71e-11;2!UBERON:0001630;4.71e-11;2!UBERON:0000945;5.43e-10;5!UBERON:0010039;5.43e-10;5!UBERON:0001155;1.68e-09;9!UBERON:0001041;3.18e-09;14!UBERON:0000059;8.72e-08;11!UBERON:0000160;3.66e-07;17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,7.11e-12,25;UBERON:0005090,2.41e-11,2;UBERON:0001630,2.41e-11,2;UBERON:0001155,1.35e-09,9;UBERON:0000059,7.30e-08,11;UBERON:0000160,3.20e-07,17 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0.919421224478927,0,0.369754010166788,0.46480320348181,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0.575384784644301,0,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0,0,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.472674085820339,0,0,1.57174890597255,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.365921118388786,0.265059536642971,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0,0.721879481669586,0.118306800039844,0,0.241011029883482,0.441175890929576,0.871517776369625,0.237270619111097,0.404493924480493,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.614942192715568,0,0.658501712451753,0,0.502644862058154,0.0925884451585296,0.325808305310325,0,0,0.463721619900307,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0.425325291727159,0.358234090811393,0.871901815541886,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0.871533458600294,0.899756920638513,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0.167516265334349,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0,1.20859449591622,0,1.01289087829486,0,0,0,0.451199612907412,0.15403067420883,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0.447749509444357,0.219259876645935,0.522870902049801,0.512900250232778,0.656029291399411,0,0.721287081534056,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.30347334256665,0,0,0.6970372701606,0,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,0,0.470719003883896,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61421621224659,0.146508179271894,0,0,0.568272293612826,0,0,0,0,0,0,0,0,0,1.65770349318689,1.76352923497993,0.102268682502155,0,0,0.898683511473268,0.537063524026827,0,0.0986434056369336,0,0,0,0,0,0,0.174919999992391,0,0.227586896570999,0,0.472775363535873,0,0,0,0,0.241192877250816,1.52581736317083,0,0,0.438770794307945,0.21787692703798,4.46155981691531,0,0,0,0.538545866458633,1.84700532267414,0,0,0,1.02193298195737,0,0,0.451191321234361,0,0.335643173951685,0.189753732724185,0,0,0.326465616318295,1.69623685720729,0,3.98104772431402,4.68825091867698,0,0.889563386041866,0.247127877893006,0.104421949505455,0,1.60515529459758,0.234264445725339,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0.30607276163049,0.063186579628488,1.05226393590145,0.103688191397247,0,0,0,0,0.569219092059585,0,1.90915712168644,0.391969589657511,0,0.52418000472609,0,1.35458863804719,1.31560770755134,1.23173185579814,0,0.0882561266915003,0.677942222341597,0,0,0,0.782205530939212,0,6.61704283691993,0.19980960958213,1.87317542300338,0,0,3.02515075775114,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.551482276150566,0.412079291905832,0.606631894687664,1.96854963029498,0.0846733320657845,0,0,0.803765742325096,0.687697182986169,0,0.2249738915515,0,0.0607495566580247,0,4.2555081941567,2.20309270166992,0,0,0.191915197319445,0.714695326373367,0,0.25426853765475,0.542999601753713,0.864221491201268,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0.26446520348538,0.342173675768659,0,0.747511887973863,0.157204305099666,0,0,0,0.974340787047167,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0.332787154610557,0.372578417648301,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0.295710299979268,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0.336749488765919,0,0.385239660814607,0.857766365499703,0.260994291965212,0,0.231522474323834,0.244736704506468,0,0.308801447160972,0.219284049578707,0,0.192914038270915,0.168942440653073,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.184105950251841,0.839277046316667,0,0.127894371303652,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0.11796972334774,0,0.115525666150338,0,0,0,0.150420656698515,0,1.56302802246618,2.3571602503328,0.327543835020193,0.443568258651136,0,0,0,0.0634158101939068,0,0.548257766857182,0.496211178389294,0,0.383287282918786,0,0,0.606965604236632,0.682986574053893,0.443511850813194,0.115233987555779,0,0.203909198930495,0.0657727735628491,0.590969204419841,0.444925607568277,0.156986185701028,0,0.280272163313789,0,0.431855182437243,0,0.571812353413251,0,0.116241425368125,0,0,0,0.17071847709395,0,2.15113679410139,0,0,0.423387050190929,0.4582137370881,0,0,0.335566295393377,1.3741032706134,6.82740379900709,1.94228651156368,4.92781472909986,0,0.485710993059139,0.233939463462106,0.198950775161368,0,0,0,0.301925687133347,7.87176412701035,0.655678681511872,0.470317296361523,0,0,0,0,0.8453114551668,0,0,0.257831551894309,0,0.178553938605658,0,0.401206833445841,18.9887460944094,2.2936464170227,0,0,0.135982980381829,0,0,0,0.462175628631418,0,0,0,0,0.101988829741982,0,0.275684698604535,0.752122617877125,0.227336094654718,0,0,0.20686599172379,2.77204176471275,0.476128862927481,0,0.124149428591716,0,0.25458863311266,0.202117188958219,0.217716747896961,1.02669990325584,0.134704106029175,0.860666464712116,0.332660356546013,0.0814032686109745,0.106727345877715,0,0.269475606319761,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0.919421224478927,0,0.369754010166788,0.46480320348181,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0.575384784644301,0,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0,0,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.472674085820339,0,0,1.57174890597255,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.365921118388786,0.265059536642971,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0,0.721879481669586,0.118306800039844,0,0.241011029883482,0.441175890929576,0.871517776369625,0.237270619111097,0.404493924480493,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.614942192715568,0,0.658501712451753,0,0.502644862058154,0.0925884451585296,0.325808305310325,0,0,0.463721619900307,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0.425325291727159,0.358234090811393,0.871901815541886,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0.871533458600294,0.899756920638513,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0.167516265334349,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0,1.20859449591622,0,1.01289087829486,0,0,0,0.451199612907412,0.15403067420883,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0.447749509444357,0.219259876645935,0.522870902049801,0.512900250232778,0.656029291399411,0,0.721287081534056,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.30347334256665,0,0,0.6970372701606,0,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,0,0.470719003883896,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61421621224659,0.146508179271894,0,0,0.568272293612826,0,0,0,0,0,0,0,0,0,1.65770349318689,1.76352923497993,0.102268682502155,0,0,0.898683511473268,0.537063524026827,0,0.0986434056369336,0,0,0,0,0,0,0.174919999992391,0,0.227586896570999,0,0.472775363535873,0,0,0,0,0.241192877250816,1.52581736317083,0,0,0.438770794307945,0.21787692703798,4.46155981691531,0,0,0,0.538545866458633,1.84700532267414,0,0,0,1.02193298195737,0,0,0.451191321234361,0,0.335643173951685,0.189753732724185,0,0,0.326465616318295,1.69623685720729,0,3.98104772431402,4.68825091867698,0,0.889563386041866,0.247127877893006,0.104421949505455,0,1.60515529459758,0.234264445725339,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0.30607276163049,0.063186579628488,1.05226393590145,0.103688191397247,0,0,0,0,0.569219092059585,0,1.90915712168644,0.391969589657511,0,0.52418000472609,0,1.35458863804719,1.31560770755134,1.23173185579814,0,0.0882561266915003,0.677942222341597,0,0,0,0.782205530939212,0,6.61704283691993,0.19980960958213,1.87317542300338,0,0,3.02515075775114,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.551482276150566,0.412079291905832,0.606631894687664,1.96854963029498,0.0846733320657845,0,0,0.803765742325096,0.687697182986169,0,0.2249738915515,0,0.0607495566580247,0,4.2555081941567,2.20309270166992,0,0,0.191915197319445,0.714695326373367,0,0.25426853765475,0.542999601753713,0.864221491201268,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0.26446520348538,0.342173675768659,0,0.747511887973863,0.157204305099666,0,0,0,0.974340787047167,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0.332787154610557,0.372578417648301,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0.295710299979268,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0.336749488765919,0,0.385239660814607,0.857766365499703,0.260994291965212,0,0.231522474323834,0.244736704506468,0,0.308801447160972,0.219284049578707,0,0.192914038270915,0.168942440653073,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.184105950251841,0.839277046316667,0,0.127894371303652,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0.11796972334774,0,0.115525666150338,0,0,0,0.150420656698515,0,1.56302802246618,2.3571602503328,0.327543835020193,0.443568258651136,0,0,0,0.0634158101939068,0,0.548257766857182,0.496211178389294,0,0.383287282918786,0,0,0.606965604236632,0.682986574053893,0.443511850813194,0.115233987555779,0,0.203909198930495,0.0657727735628491,0.590969204419841,0.444925607568277,0.156986185701028,0,0.280272163313789,0,0.431855182437243,0,0.571812353413251,0,0.116241425368125,0,0,0,0.17071847709395,0,2.15113679410139,0,0,0.423387050190929,0.4582137370881,0,0,0.335566295393377,1.3741032706134,6.82740379900709,1.94228651156368,4.92781472909986,0,0.485710993059139,0.233939463462106,0.198950775161368,0,0,0,0.301925687133347,7.87176412701035,0.655678681511872,0.470317296361523,0,0,0,0,0.8453114551668,0,0,0.257831551894309,0,0.178553938605658,0,0.401206833445841,18.9887460944094,2.2936464170227,0,0,0.135982980381829,0,0,0,0.462175628631418,0,0,0,0,0.101988829741982,0,0.275684698604535,0.752122617877125,0.227336094654718,0,0,0.20686599172379,2.77204176471275,0.476128862927481,0,0.124149428591716,0,0.25458863311266,0.202117188958219,0.217716747896961,1.02669990325584,0.134704106029175,0.860666464712116,0.332660356546013,0.0814032686109745,0.106727345877715,0,0.269475606319761,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr5:173907020..173907027,+ | |short_description=p@chr5:173907020..173907027,+ | ||
}} | }} |
Latest revision as of 13:21, 30 July 2015
Short description: | p@chr5:173907020..173907027, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:173907020..173907027, + |
Coexpression cluster: | C1953_stomach_signet_gall_small_giant_adenocarcinoma_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 9.40e-08 | 3 |
epithelial cell of prostate | 2.11e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 7.11e-12 | 25 |
muscle structure | 2.41e-11 | 2 |
muscle organ | 2.41e-11 | 2 |
colon | 1.35e-09 | 9 |
large intestine | 7.30e-08 | 11 |
intestine | 3.20e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.35e-11 | 2 |
adenocarcinoma | 4.83e-07 | 25 |