FFCP PHASE1:Hg19::chr17:48266579..48266595,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-434bp_to_ENST00000511732_5end | |association_with_transcript=-434bp_to_ENST00000511732_5end | ||
|cluster_id=chr17:48266579..48266595,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_54_at_COL1A1_5end | |description=CAGE_peak_54_at_COL1A1_5end | ||
|id=chr17:48266579..48266595,- | |id=chr17:48266579..48266595,- | ||
|ontology_enrichment_celltype=CL:0000055!6.11e-31!180;CL:0000057!6.62e-25!75;CL:0000048!7.85e-12!430;CL:0000183!3.15e-11!59;CL:0000723!5.40e-11!436;CL:0000034!9.55e-11!444;CL:0000680!4.66e-10!57;CL:0000056!4.66e-10!57;CL:0000355!4.66e-10!57;CL:0000187!6.83e-10!54;CL:0002334!2.27e-08!12;CL:0000144!6.94e-08!625;CL:0000499!7.35e-08!27;CL:0000393!9.76e-08!60;CL:0000211!9.76e-08!60;CL:0002371!1.55e-07!591;CL:0002320!2.42e-07!365;CL:0000327!3.62e-07!14;CL:0002620!6.38e-07!23 | |ontology_enrichment_celltype=CL:0000055!6.11e-31!180;CL:0000057!6.62e-25!75;CL:0000048!7.85e-12!430;CL:0000183!3.15e-11!59;CL:0000723!5.40e-11!436;CL:0000034!9.55e-11!444;CL:0000680!4.66e-10!57;CL:0000056!4.66e-10!57;CL:0000355!4.66e-10!57;CL:0000187!6.83e-10!54;CL:0002334!2.27e-08!12;CL:0000144!6.94e-08!625;CL:0000499!7.35e-08!27;CL:0000393!9.76e-08!60;CL:0000211!9.76e-08!60;CL:0002371!1.55e-07!591;CL:0002320!2.42e-07!365;CL:0000327!3.62e-07!14;CL:0002620!6.38e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000134;6.62e-10;55!CL:0000048;3.49e-09;58!CL:0000723;4.07e-09;61!CL:0000057;9.75e-09;73!CL:0002320;1.82e-08;188!CL:0000499;3.91e-07;28!CL:0002620;4.02e-07;23!CL:0002570;8.36e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.30e-22,76;CL:0000048,1.33e-13,427;CL:0000723,5.77e-13,433;CL:0000034,3.79e-12,441;CL:0002320,1.05e-09,361;CL:0000134,4.72e-09,354;CL:0000219,1.20e-07,386;CL:0002620,3.42e-07,23;CL:0000499,4.36e-07,28;CL:0002570,7.27e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.29e-11!83;UBERON:0002329!5.29e-11!83;UBERON:0003077!5.29e-11!83;UBERON:0003059!5.29e-11!83;UBERON:0007282!5.29e-11!83;UBERON:0009618!5.29e-11!83;UBERON:0007285!5.29e-11!83;UBERON:0001134!5.33e-11!61;UBERON:0002036!5.33e-11!61;UBERON:0003082!5.33e-11!61;UBERON:0002385!8.55e-11!63;UBERON:0001015!8.55e-11!63;UBERON:0000383!8.55e-11!63;UBERON:0004290!2.84e-10!70;UBERON:0000486!2.96e-08!82;UBERON:0002384!8.03e-08!375;UBERON:0005256!1.81e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.52e-09;6!UBERON:0002358;7.52e-09;6!UBERON:0003684;7.52e-09;6!UBERON:0001178;7.52e-09;6!UBERON:0002384;3.91e-08;198!UBERON:0004457;3.65e-07;9!UBERON:0000042;3.65e-07;9!UBERON:0003104;5.59e-07;7!UBERON:0009142;5.59e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,4.47e-10,371;UBERON:0003688,8.76e-09,6;UBERON:0002358,8.76e-09,6;UBERON:0003684,8.76e-09,6;UBERON:0001178,8.76e-09,6;UBERON:0001134,8.54e-07,62;UBERON:0002036,8.54e-07,62;UBERON:0003082,8.54e-07,62 | |||
|phase1_expression=2.72517568905835,2.35510576280081,5.63817616383885,3.00219895059391,6.70441641640932,5.23403114460221,0,0,0.261185628199839,0.245733936501509,0,0,2.11013582582763,0.74259811776028,0.331397375727916,0.672325146451775,0.602694528023977,0,0.487932798790507,1.47745269692145,1.02000345622126,2.19418305034661,0,0,0.502170558379211,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,1.02290049474824,2.1686349143074,3.50936537445123,3.0417768981773,3.1811437882044,6.32625331393427,0.189069634328136,1.10864698731282,1.22968699970376,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,2.02608818663328,0.794455084879313,8.60509862246441,4.61068896857864,1.12135520028461,3.20246987189115,2.96001058100592,0.311211035399766,0.67355336034844,0.653847612453835,4.08665054641315,2.30470369792,0.468642863667593,0,0,0.298897361103602,0.23486899728753,0,0,0.61246251376468,0.122834317311768,0.516628905878827,10.6920257155385,7.17074094907815,5.46096817162816,2.87447256726495,0,0,0,3.5118209670467,3.67785354958824,4.6573798261045,1.13432183160021,2.87023417102179,5.33893472046419,4.4505699243508,3.90118424909723,1.44273540933814,1.03056216018252,3.35010341396862,2.70042131586026,1.46155507741798,3.28163906517349,2.85354685791128,2.42469085228218,4.61512470271599,1.20902517873168,0.508681776931463,0,0,0,0.121973706129595,0,0.116193942869518,0.207322110030741,0,0,1.56449532329816,1.28648187638577,0,1.39310378409594,2.16563844500876,0,0,0,0,0,0,0,0,0,0,1.40241773803446,6.5851841813024,8.82052268313252,0,0,0.590789906681404,0,0,0.857839051492628,0,0,0,0,0.325808305310325,1.03993478527958,0,0.115930404975077,1.29149563659404,0.144366447761074,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0.87192013766656,0.4400297149257,2.32689088364,0,5.071816515336,1.86156681609409,1.04007436911366,1.54324424557285,1.41849132023278,0.799266537048298,3.28849385413739,13.5655401347861,2.46972101034231,1.30294473717494,3.55391948742546,0,0,0.871533458600294,0.099972991182057,0,0,0,3.83399768786532,8.04033550838797,1.42636905040718,1.01346914667305,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,1.00034104211935,0.271265023699736,15.3898437532797,13.0253161821928,8.67363282686641,3.63138386477411,2.40756879782175,2.27407504055985,2.0694614258501,0.664225598535437,2.94990669666725,0.521301686808497,2.93701736194111,5.14715135716284,0,0,0,0.303127571446259,3.32870879020994,2.41912234663744,4.96215615637554,2.455391572609,12.9103643439214,6.27881831352935,3.58195074346692,12.5466058492014,2.96836132889982,0.616838775210622,3.55123450626254,0.164254312027618,0.519254429183621,0.929683027679674,0,0,0,1.95184561879831,1.27463817604702,2.22911505431021,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0.541892875087706,1.50506932156456,0,0,0,0,0,0,0,0,0,0.54941678891006,0.247528499761764,0,0,4.82051789532479,0.290012154876366,0.154048617114644,0.460511024178389,0.137836572484531,1.07420244868274,1.45016693914229,0.255679882248303,3.91740956845644,0.165284915360978,0.576570202095319,0,0.10115778085555,0,4.09256050879832,0,0,0,0,0.37064843820784,0.143124886741991,1.116475108079,0.949138274156178,3.8126038784765,2.81487570442467,0.855877976067841,0,0.78494864019923,1.2591072030832,3.84351841630477,1.41374882814824,0,0,1.26377536871694,6.33923860816467,0,0,0.682499557039929,3.67654123079653,3.39024349860728,3.30819206127675,0.66343897524122,0,1.15755106853338,1.31178950409327,1.21746226177622,0,1.12678241012897,0.286822704408103,1.08073945114433,1.78335525740625,0,0.422215270595328,2.30506425071931,0,1.74967360122491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,5.90975216557434,0,0,0,0.197286811273867,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0,0,0.307801034015188,0.113942055847001,0,0,0.108647371922008,0,1.55715908783166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,12.0386647094818,0,0,0,0,0,3.62972148145992,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.34945333648406,0,0,0.0730893170861856,0,0,0,4.29363407483012,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0083580899397,0,0.837847203816763,0,0,0,0,0.223171457441873,0.201550417460179,3.96329871896644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0.25426853765475,0.542999601753713,0.864221491201268,0.326587360109409,1.19730191562487,0,0.511164065356265,0,0,0,0,0,0,0,0,0.78602152549833,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,2.53733164907686,3.97312626740282,1.10961172300523,0.568209015825267,1.0062716070103,2.669433664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| ||
|short_description=p54@COL1A1 | |short_description=p54@COL1A1 | ||
}} | }} |
Latest revision as of 00:23, 16 September 2015
Short description: | p54@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_54_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -434bp_to_ENST00000511732_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.30e-22 | 76 |
multi fate stem cell | 1.33e-13 | 427 |
somatic stem cell | 5.77e-13 | 433 |
stem cell | 3.79e-12 | 441 |
connective tissue cell | 1.05e-09 | 361 |
mesenchymal cell | 4.72e-09 | 354 |
motile cell | 1.20e-07 | 386 |
skin fibroblast | 3.42e-07 | 23 |
stromal cell | 4.36e-07 | 28 |
mesenchymal stem cell of adipose | 7.27e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.47e-10 | 371 |
omentum | 8.76e-09 | 6 |
peritoneum | 8.76e-09 | 6 |
abdominal cavity | 8.76e-09 | 6 |
visceral peritoneum | 8.76e-09 | 6 |
skeletal muscle tissue | 8.54e-07 | 62 |
striated muscle tissue | 8.54e-07 | 62 |
myotome | 8.54e-07 | 62 |