FFCP PHASE1:Hg19::chr17:48269369..48269390,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=409bp_to_ENST00000504289_5end | |association_with_transcript=409bp_to_ENST00000504289_5end | ||
|cluster_id=chr17:48269369..48269390,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_48_at_COL1A1_5end | |description=CAGE_peak_48_at_COL1A1_5end | ||
|id=chr17:48269369..48269390,- | |id=chr17:48269369..48269390,- | ||
|ontology_enrichment_celltype=CL:0000055!1.59e-33!180;CL:0000057!1.93e-24!75;CL:0000183!8.90e-13!59;CL:0000048!4.46e-12!430;CL:0000680!5.63e-12!57;CL:0000056!5.63e-12!57;CL:0000355!5.63e-12!57;CL:0000187!3.05e-11!54;CL:0000723!3.22e-11!436;CL:0000034!2.18e-10!444;CL:0000393!7.79e-09!60;CL:0000211!7.79e-09!60;CL:0002494!2.18e-08!16;CL:0002371!3.45e-08!591;CL:0002334!3.95e-08!12;CL:0000144!4.05e-08!625;CL:0002620!7.87e-08!23;CL:0000192!8.82e-08!42;CL:0000514!8.82e-08!42;CL:0002320!4.70e-07!365;CL:0000499!5.54e-07!27;CL:0002570!6.50e-07!8 | |ontology_enrichment_celltype=CL:0000055!1.59e-33!180;CL:0000057!1.93e-24!75;CL:0000183!8.90e-13!59;CL:0000048!4.46e-12!430;CL:0000680!5.63e-12!57;CL:0000056!5.63e-12!57;CL:0000355!5.63e-12!57;CL:0000187!3.05e-11!54;CL:0000723!3.22e-11!436;CL:0000034!2.18e-10!444;CL:0000393!7.79e-09!60;CL:0000211!7.79e-09!60;CL:0002494!2.18e-08!16;CL:0002371!3.45e-08!591;CL:0002334!3.95e-08!12;CL:0000144!4.05e-08!625;CL:0002620!7.87e-08!23;CL:0000192!8.82e-08!42;CL:0000514!8.82e-08!42;CL:0002320!4.70e-07!365;CL:0000499!5.54e-07!27;CL:0002570!6.50e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000134;3.51e-09;55!CL:0002570;5.19e-09;8!CL:0000057;1.14e-08;73!CL:0002334;2.55e-08;12!CL:0000048;3.35e-08;58!CL:0000499;4.03e-08;28!CL:0000723;4.54e-08;61!CL:0002320;4.70e-08;188!CL:0000327;4.13e-07;15!CL:0002569;9.10e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.67e-21,76;CL:0000048,5.25e-16,427;CL:0000723,2.87e-15,433;CL:0000034,2.52e-14,441;CL:0002320,5.68e-12,361;CL:0000134,2.86e-10,354;CL:0002570,4.20e-09,8;CL:0000219,1.22e-08,386;CL:0002334,2.31e-08,12;CL:0000499,5.13e-08,28;CL:0000187,2.27e-07,55;CL:0000680,3.05e-07,58;CL:0000056,3.05e-07,58;CL:0000355,3.05e-07,58;CL:0000327,4.24e-07,15;CL:0002569,6.52e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.79e-15!83;UBERON:0002329!6.79e-15!83;UBERON:0003077!6.79e-15!83;UBERON:0003059!6.79e-15!83;UBERON:0007282!6.79e-15!83;UBERON:0009618!6.79e-15!83;UBERON:0007285!6.79e-15!83;UBERON:0004290!2.90e-13!70;UBERON:0001134!2.36e-12!61;UBERON:0002036!2.36e-12!61;UBERON:0003082!2.36e-12!61;UBERON:0002385!1.74e-11!63;UBERON:0001015!1.74e-11!63;UBERON:0000383!1.74e-11!63;UBERON:0000486!1.73e-10!82;UBERON:0005256!1.96e-09!143;UBERON:0000948!1.01e-08!24;UBERON:0005498!1.01e-08!24;UBERON:0004140!1.01e-08!24;UBERON:0009881!1.01e-08!24;UBERON:0004141!1.01e-08!24;UBERON:0003084!1.01e-08!24;UBERON:0007005!1.01e-08!24;UBERON:0004139!1.01e-08!24;UBERON:0004291!1.01e-08!24;UBERON:0002384!3.28e-07!375;UBERON:0007100!5.29e-07!27;UBERON:0002199!9.36e-07!45;UBERON:0002416!9.36e-07!45;UBERON:0004872!9.72e-07!84 | |ontology_enrichment_uberon=UBERON:0000914!6.79e-15!83;UBERON:0002329!6.79e-15!83;UBERON:0003077!6.79e-15!83;UBERON:0003059!6.79e-15!83;UBERON:0007282!6.79e-15!83;UBERON:0009618!6.79e-15!83;UBERON:0007285!6.79e-15!83;UBERON:0004290!2.90e-13!70;UBERON:0001134!2.36e-12!61;UBERON:0002036!2.36e-12!61;UBERON:0003082!2.36e-12!61;UBERON:0002385!1.74e-11!63;UBERON:0001015!1.74e-11!63;UBERON:0000383!1.74e-11!63;UBERON:0000486!1.73e-10!82;UBERON:0005256!1.96e-09!143;UBERON:0000948!1.01e-08!24;UBERON:0005498!1.01e-08!24;UBERON:0004140!1.01e-08!24;UBERON:0009881!1.01e-08!24;UBERON:0004141!1.01e-08!24;UBERON:0003084!1.01e-08!24;UBERON:0007005!1.01e-08!24;UBERON:0004139!1.01e-08!24;UBERON:0004291!1.01e-08!24;UBERON:0002384!3.28e-07!375;UBERON:0007100!5.29e-07!27;UBERON:0002199!9.36e-07!45;UBERON:0002416!9.36e-07!45;UBERON:0004872!9.72e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.41e-09;14!UBERON:0004457;2.58e-08;9!UBERON:0000042;2.58e-08;9!UBERON:0003104;5.52e-08;7!UBERON:0009142;5.52e-08;7!UBERON:0002384;6.07e-08;198!UBERON:0003688;9.91e-08;6!UBERON:0002358;9.91e-08;6!UBERON:0003684;9.91e-08;6!UBERON:0001178;9.91e-08;6!UBERON:0003422;9.10e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.62e-12,371;UBERON:0001013,2.98e-09,14;UBERON:0001134,5.20e-08,62;UBERON:0002036,5.20e-08,62;UBERON:0003082,5.20e-08,62;UBERON:0003688,9.64e-08,6;UBERON:0002358,9.64e-08,6;UBERON:0003684,9.64e-08,6;UBERON:0001178,9.64e-08,6;UBERON:0007524,1.33e-07,73;UBERON:0002385,1.63e-07,64;UBERON:0001015,1.63e-07,64;UBERON:0000383,1.63e-07,64;UBERON:0002329,3.10e-07,71;UBERON:0003059,3.10e-07,71;UBERON:0007282,3.10e-07,71;UBERON:0004290,3.10e-07,71;UBERON:0009618,3.10e-07,71;UBERON:0003077,5.05e-07,72;UBERON:0007285,5.05e-07,72;UBERON:0007503,5.34e-07,78;UBERON:0003104,5.81e-07,160;UBERON:0009142,5.81e-07,160;UBERON:0003422,6.52e-07,6 | |||
|phase1_expression=2.36181893051724,4.06790995392868,4.36958652697511,4.00293193412522,7.59833860526389,5.23403114460221,17.7309914717817,0,0,0,0,0.655324116390517,1.58260186937072,0.866364470720326,2.98257638155124,0.672325146451775,0,0,0,0.861847406537515,2.44800829493104,3.44800193625897,0,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,1.53435074212236,1.0843174571537,1.50401373190767,5.21447468258965,2.3858578411533,4.37971383272372,0.189069634328136,1.33037638477538,1.58102614247627,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9091585508596,2.65924074495618,1.32409180813219,11.4734648299525,2.12801029319014,4.48542080113846,1.06748995729705,5.92002116201184,0.622422070799533,1.21239604862719,0.490385709340376,2.72443369760877,2.88087962239999,0.234321431833797,0.312160076830321,0,0.448346041655403,0.352303495931295,0.485618833104395,0.140450806702248,0.204154171254893,0.368502951935304,0.826606249406124,8.31602000097437,5.93440630268536,1.82032272387605,6.46756327634615,0.168336113954066,0.375355559615893,0,0.438977620880838,5.82326812018137,4.8076178850111,1.13432183160021,2.15267562826634,3.84403299873421,3.39091041855299,4.20127534518163,1.23663035086127,2.06112432036503,1.67505170698431,2.86919764810153,2.43592512902997,2.27190396819703,2.20919756741518,3.55621325001386,3.55009592516614,0.906768884048762,1.18692414617341,0,0,0,0.121973706129595,0,0,0,0,0.36497735907583,3.12899064659632,1.28648187638577,0,1.39310378409594,4.33127689001751,0,0,0,0,0,0,0.134831308160164,0,0,0,5.60967095213783,2.4694440679884,10.2906097969879,0,0,1.18157981336281,0,0,0.514703430895577,0,0,0,0,0,1.03993478527958,0,0,0.587043471179108,0.144366447761074,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.205654985406647,0,0,0,1.30788020649984,0.5867062865676,1.80980402060889,7.15312891703765,5.071816515336,1.59562869950922,0,1.02882949704857,1.41849132023278,0.532844358032199,4.71827379071887,9.22456729165453,1.64648067356154,1.95441710576241,3.19852753868291,4.75171123760058,0.301439377059586,0,0.099972991182057,0,0,0,2.15662369942424,5.7430967917057,0,1.30303176000821,0.61642896765115,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,3.00102312635806,2.17012018959788,24.748532522166,19.805617756485,11.1968714674094,3.04567678981054,3.91229929646035,2.27407504055985,4.1389228517002,0,3.68738337083406,0.781952530212746,2.93701736194111,6.86286847621712,0,0,0,0.303127571446259,4.99306318531491,1.81434175997808,4.71404834855676,2.76231551918512,12.0683840606222,5.89440086576224,1.53512174720011,11.4206284011961,8.90508398669946,1.54209693802656,2.30830242907065,0.328508624055237,0.519254429183621,1.04589340613963,0,0,0,2.06666006696292,2.1850940160806,2.36023946926963,0,0.0770153371044148,0,0,0,0,0,0,0,1.08378575017541,3.51182841698397,0,0,0.223874754722178,0,0,0,0,0.325378394664303,0,1.00726411300178,0.165018999841176,0.574265537996172,0.650060246036521,4.82051789532479,0.193341436584244,1.23238893691716,1.22802939780904,1.65403886981437,0.859361958946189,1.45016693914229,1.10794615640931,4.5406338179836,0.165284915360978,0.192190067365106,0,0,0.929691098594572,6.61105928344344,0,0.924100740528266,0,0,0.9266210955196,0,1.48863347743867,0.949138274156178,3.43134349062885,1.79128453917934,0.855877976067841,1.27281299170375,0,1.2591072030832,4.39259247577688,2.35624804691373,0.404364963146632,1.58510321173008,0.842516912477962,0.48763373908959,2.68084838594413,0,1.22849920267187,3.25232493493539,3.39024349860728,1.10273068709225,0,0,2.89387767133344,1.9676842561399,1.01455188481352,0.92947049429925,1.40847801266121,0.717056761020258,1.96498082026242,1.426684205925,0.354761064070598,2.53329162357197,5.59801318031833,1.51789269506286,2.0996083214699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.23874448473769,0,0,0,0,0,0,0,0.996239941255349,0,0,0.102268682502155,0,4.0435146396035,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0.615602068030377,0.113942055847001,0,0,0,0,0.732780747214898,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,15.248975298677,0,0,0,0,0,1.20990716048664,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0,0,0,0.0882561266915003,2.93774963014692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14882720709979,0,1.11712960508902,0.229160424011684,0,0,0,0,0.403100834920358,2.88239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0.714695326373367,0,0,0,0.864221491201268,0.326587360109409,0,0,1.87426823963964,0,0,0,0,0,0,0,0.106787412567695,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,5.8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| ||
|short_description=p48@COL1A1 | |short_description=p48@COL1A1 | ||
}} | }} |
Latest revision as of 00:37, 16 September 2015
Short description: | p48@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_48_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 409bp_to_ENST00000504289_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.67e-21 | 76 |
multi fate stem cell | 5.25e-16 | 427 |
somatic stem cell | 2.87e-15 | 433 |
stem cell | 2.52e-14 | 441 |
connective tissue cell | 5.68e-12 | 361 |
mesenchymal cell | 2.86e-10 | 354 |
mesenchymal stem cell of adipose | 4.20e-09 | 8 |
motile cell | 1.22e-08 | 386 |
preadipocyte | 2.31e-08 | 12 |
stromal cell | 5.13e-08 | 28 |
muscle cell | 2.27e-07 | 55 |
muscle precursor cell | 3.05e-07 | 58 |
myoblast | 3.05e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.05e-07 | 58 |
extracellular matrix secreting cell | 4.24e-07 | 15 |
mesenchymal stem cell of umbilical cord | 6.52e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.62e-12 | 371 |
adipose tissue | 2.98e-09 | 14 |
skeletal muscle tissue | 5.20e-08 | 62 |
striated muscle tissue | 5.20e-08 | 62 |
myotome | 5.20e-08 | 62 |
omentum | 9.64e-08 | 6 |
peritoneum | 9.64e-08 | 6 |
abdominal cavity | 9.64e-08 | 6 |
visceral peritoneum | 9.64e-08 | 6 |
dense mesenchyme tissue | 1.33e-07 | 73 |
muscle tissue | 1.63e-07 | 64 |
musculature | 1.63e-07 | 64 |
musculature of body | 1.63e-07 | 64 |
somite | 3.10e-07 | 71 |
presomitic mesoderm | 3.10e-07 | 71 |
presumptive segmental plate | 3.10e-07 | 71 |
dermomyotome | 3.10e-07 | 71 |
trunk paraxial mesoderm | 3.10e-07 | 71 |
paraxial mesoderm | 5.05e-07 | 72 |
presumptive paraxial mesoderm | 5.05e-07 | 72 |
epithelial vesicle | 5.34e-07 | 78 |
mesenchyme | 5.81e-07 | 160 |
entire embryonic mesenchyme | 5.81e-07 | 160 |
mesenchyme of umbilical cord | 6.52e-07 | 6 |