FFCP PHASE2:Hg19::chr17:48270182..48270219,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1277 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:2197 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=2197 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 00:41, 16 September 2015
| Short description: | p52@COL1A1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_52_at_COL1A1_5end |
| Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
| Association with transcript: | -382bp_to_ENST00000504289_5end |
| EntrezGene: | COL1A1 |
| HGNC: | 2197 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p52@COL1A1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 4.01e-22 | 76 |
| multi fate stem cell | 4.59e-13 | 427 |
| somatic stem cell | 1.90e-12 | 433 |
| stem cell | 1.17e-11 | 441 |
| connective tissue cell | 1.02e-09 | 361 |
| mesenchymal cell | 4.78e-09 | 354 |
| stromal cell | 9.78e-09 | 28 |
| extracellular matrix secreting cell | 1.35e-07 | 15 |
| motile cell | 1.98e-07 | 386 |
| skin fibroblast | 3.61e-07 | 23 |
Showing 1 to 10 of 11 entries
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 3.54e-10 | 371 |
| omentum | 2.44e-08 | 6 |
| peritoneum | 2.44e-08 | 6 |
| abdominal cavity | 2.44e-08 | 6 |
| visceral peritoneum | 2.44e-08 | 6 |
| adipose tissue | 6.24e-07 | 14 |
Showing 1 to 6 of 6 entries
