FFCP PHASE1:Hg19::chr12:106641852..106641863,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10970 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16991 | |||
|TSSclassifier=strong | |||
|UniProt=Q07065 | |||
|association_with_transcript=-86bp_to_ENST00000378026_5end | |||
|cluster_id=chr12:106641852..106641863,- | |||
|description=CAGE_peak_9_at_CKAP4_5end | |||
|id=chr12:106641852..106641863,- | |||
|ontology_enrichment_celltype=CL:0000055!4.48e-18!180;CL:0000222!1.90e-15!119;CL:0000220!2.30e-15!246;CL:0002321!2.74e-15!248;CL:0000183!6.84e-12!59;CL:0000680!2.40e-11!57;CL:0000056!2.40e-11!57;CL:0000355!2.40e-11!57;CL:0000393!4.53e-11!60;CL:0000211!4.53e-11!60;CL:0000187!6.85e-11!54;CL:0000192!1.36e-10!42;CL:0000514!1.36e-10!42;CL:0000359!1.29e-08!32;CL:0000144!1.61e-07!625;CL:0000548!3.16e-07!679;CL:0000004!3.16e-07!679;CL:0000255!3.16e-07!679;CL:0000012!7.80e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000192;2.82e-07;43!CL:0000359;3.32e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.32e-12,121;CL:0000680,4.13e-11,58;CL:0000056,4.13e-11,58;CL:0000355,4.13e-11,58;CL:0000393,1.05e-10,61;CL:0000211,1.05e-10,61;CL:0000187,1.95e-10,55;CL:0000192,5.89e-10,43;CL:0000514,5.89e-10,43;CL:0002321,1.19e-08,250;CL:0000359,2.12e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;2.82e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!3.70e-15!79;UBERON:0007798!3.70e-15!79;UBERON:0000055!3.03e-13!69;UBERON:0001981!1.09e-12!60;UBERON:0007500!1.09e-12!60;UBERON:0004537!1.09e-12!60;UBERON:0006965!1.09e-12!60;UBERON:0001134!2.28e-11!61;UBERON:0002036!2.28e-11!61;UBERON:0003082!2.28e-11!61;UBERON:0000490!3.75e-11!138;UBERON:0000468!5.26e-11!659;UBERON:0001637!9.20e-11!42;UBERON:0003509!9.20e-11!42;UBERON:0004572!9.20e-11!42;UBERON:0003914!2.12e-10!118;UBERON:0002385!2.83e-10!63;UBERON:0001015!2.83e-10!63;UBERON:0000383!2.83e-10!63;UBERON:0000486!4.74e-10!82;UBERON:0001009!5.29e-10!113;UBERON:0004290!5.89e-10!70;UBERON:0000914!1.09e-09!83;UBERON:0002329!1.09e-09!83;UBERON:0003077!1.09e-09!83;UBERON:0003059!1.09e-09!83;UBERON:0007282!1.09e-09!83;UBERON:0009618!1.09e-09!83;UBERON:0007285!1.09e-09!83;UBERON:0004535!1.14e-09!110;UBERON:0004872!1.62e-09!84;UBERON:0004573!5.51e-09!33;UBERON:0004571!5.51e-09!33;UBERON:0000480!8.80e-09!626;UBERON:0005256!1.68e-08!143;UBERON:0000467!1.91e-08!625;UBERON:0000119!2.31e-08!312;UBERON:0000483!4.61e-08!309;UBERON:0000922!1.66e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,2.07e-11,78;UBERON:0007798,2.07e-11,78;UBERON:0007503,1.91e-10,78;UBERON:0001134,2.91e-10,62;UBERON:0002036,2.91e-10,62;UBERON:0003082,2.91e-10,62;UBERON:0007524,8.45e-10,73;UBERON:0000055,8.48e-10,68;UBERON:0007500,1.23e-09,59;UBERON:0001981,1.23e-09,59;UBERON:0004537,1.23e-09,59;UBERON:0006965,1.23e-09,59;UBERON:0002385,1.40e-09,64;UBERON:0001015,1.40e-09,64;UBERON:0000383,1.40e-09,64;UBERON:0002329,1.63e-09,71;UBERON:0003059,1.63e-09,71;UBERON:0007282,1.63e-09,71;UBERON:0004290,1.63e-09,71;UBERON:0009618,1.63e-09,71;UBERON:0003077,3.25e-09,72;UBERON:0007285,3.25e-09,72;UBERON:0004535,6.10e-09,109;UBERON:0001009,6.44e-09,112;UBERON:0000486,1.15e-08,83;UBERON:0000490,1.21e-08,148;UBERON:0004872,2.93e-08,83;UBERON:0003914,5.21e-08,117;UBERON:0001637,5.46e-08,42;UBERON:0003509,5.46e-08,42;UBERON:0004572,5.46e-08,42;UBERON:0003104,6.71e-08,160;UBERON:0009142,6.71e-08,160;UBERON:0005256,3.24e-07,122 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.281908808191942,0,0,0,0,0.631719873426831,0.522371256399677,1.47440361900905,2.09340350391728,0.655324116390517,1.31883489114227,0.495065411840187,0.662794751455832,1.34465029290355,1.20538905604795,0.730310090387373,0.975865597581014,0.984968464614303,3.67201244239655,2.5076377718247,1.43117993565528,0.958120975510189,2.13422487311165,0.0764134057479513,0.164201178899891,0.0787107813136792,0.393364276848904,0.383829398097213,0.464448369948228,0,1.204823675113,0.369754010166788,0,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0,0.971680998056939,0,1.01778767145695,0.377875943688809,0.485168122375632,1.16214518452842,1.6446715520873,0.309706370895104,1.1507695692886,0.512321413058201,0.945928919554341,1.37898272294647,0,0,0.564727018627814,2.72906150057846,0.898893937780338,0.612167784741805,1.28371610830437,0,0.659702600373432,1.79517291859469,1.70489900213078,2.03146467040009,0.56738522469114,1.86846674698672,1.7587406567972,0,0.65156653411535,0.605399502633369,0.736555271975129,0.949387162322653,0,0.212604299965044,0.209658645508376,0.22465726229299,0.150176892841506,0.64290234678832,0,0,0,1.75996244461323,0,0.889509253863555,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0.895037932904712,0.361439152384566,1.00267582127178,1.01392563272577,0,1.45990461090791,0.661743720148475,2.21729397462564,1.93236528524877,0.261958150995425,0.728590576585084,0,0.324547393654683,0,0.132957960518865,0,0,0,0.993812036833525,0.860234595106124,0.694281003215189,1.13061588384802,2.09749718104953,3.85165258716094,2.29894463190492,0.516833518338658,1.42306505074684,0.33472061276467,2.41697590265488,0.760272105718513,0.488124115096339,1.47065232138347,0.81014194788176,1.3394959242612,0.898117490504679,1.80178368773316,4.5994991239765,1.89853131913626,3.29763139074733,1.31780417436063,0,1.74437620857014,2.98183171017191,1.13967460498122,0.529636723252875,3.72887606973458,1.77334191099179,0,3.20246987189115,1.48000529050296,1.24484414159907,2.82892411346345,1.47115712802113,1.66493170409425,1.72852777344,1.40592859100278,1.5608003841516,0,0.597794722207204,1.40921398372518,2.10434827678571,0.98315564691574,0.408308342509787,0.859840221182376,0.516628905878827,1.18800285728205,2.47266929278557,0.910161361938026,0,0.336672227908132,0.875829639103749,0.277064115484183,1.75591048352335,1.83892677479412,1.50238058906597,0.907457465280168,2.33206526395521,0.640672166455702,0.635795703478686,2.40072876867522,0.515262646192195,1.03056216018252,1.11670113798954,0,0.487185025805993,1.7670364197088,0.736399189138395,0.161646056818812,2.84007674013291,0.806016785821122,1.3564847384839,0.386521706326594,0.545492241181669,0.860413786167011,0.365921118388786,0.662648841607426,1.74290914304278,1.7622379352613,1.51392510525377,1.09493207722749,0,0,0,0.464367928031979,0,0.118306800039844,0,0.482022059766964,0.220587945464788,0.653638332277218,0,0.539325232640658,0.196221465125346,0,0,7.01208869017229,0.4115740113314,1.47008711385542,0,0,0,0,0.245976877086227,1.02940686179115,0.439001141634502,0,0.502644862058154,0.648119116109707,0.325808305310325,1.03993478527958,1.44331342025273,1.73895607462615,2.34817388471643,1.58803092537181,1.85194205030644,0.951270761172991,0,0.858486162094873,0,0.234004265139238,0.743155811443641,0,0.335964256397719,0.283550194484773,0.268675568108545,0.581267877027924,0,0,0.088048434013226,0.621984346622316,0.144119953416961,0.12624243342638,0.253991577168676,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0.672786506072164,2.1798003441664,0.5867062865676,1.42198887333556,0,0.845302752556,0.26593811658487,4.16029747645464,1.28603687131071,4.25547396069835,1.3321108950805,0.285955987316295,1.08524321078289,4.11620168390384,2.93162565864362,1.06617584622764,0.791951872933429,0.904318131178758,0.871533458600294,0.899756920638513,0,0,2.10833939483032,2.15662369942424,1.14861935834114,1.42636905040718,1.01346914667305,1.02738161275192,1.07436577943937,0,0.197030760201927,0,0,0.76228387266739,2.60279707715243,0,0.502548796003046,1.91381625495949,2.99602809578873,0,1.24324654030811,0.736148950314839,0,2.17012018959788,2.07970861530807,1.24900292158013,0.788512075169673,1.99140405487612,1.50473049863859,0,0,2.65690239414175,2.39679919104214,0.955719759148911,1.95801157462741,2.05886054286514,0,0,0.106727557803444,0,0,0.907170879989041,0.496215615637554,0.920771839728375,0.841980283299221,0.512556597022804,0,2.2519548960105,2.96836132889982,1.3878872442239,1.59805552781814,0.821271560138091,0.519254429183621,1.62694529843943,0.362578348774867,2.20557117333613,0.828728900423067,1.49258782613989,2.00300284807389,1.83574180943194,1.80479845162965,0.616122696835318,2.35304930753057,2.92278449306521,0.633309773357254,4.54933536283586,1.70093705276516,0.6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| |||
|short_description=p9@CKAP4 | |||
}} |
Latest revision as of 02:28, 16 September 2015
Short description: | p9@CKAP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_CKAP4_5end |
Coexpression cluster: | NA |
Association with transcript: | -86bp_to_ENST00000378026_5end |
EntrezGene: | CKAP4 |
HGNC: | 16991 |
UniProt: | Q07065 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.32e-12 | 121 |
muscle precursor cell | 4.13e-11 | 58 |
myoblast | 4.13e-11 | 58 |
multi-potent skeletal muscle stem cell | 4.13e-11 | 58 |
electrically responsive cell | 1.05e-10 | 61 |
electrically active cell | 1.05e-10 | 61 |
muscle cell | 1.95e-10 | 55 |
smooth muscle cell | 5.89e-10 | 43 |
smooth muscle myoblast | 5.89e-10 | 43 |
embryonic cell | 1.19e-08 | 250 |
vascular associated smooth muscle cell | 2.12e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
vasculature | 2.07e-11 | 78 |
vascular system | 2.07e-11 | 78 |
epithelial vesicle | 1.91e-10 | 78 |
skeletal muscle tissue | 2.91e-10 | 62 |
striated muscle tissue | 2.91e-10 | 62 |
myotome | 2.91e-10 | 62 |
dense mesenchyme tissue | 8.45e-10 | 73 |
vessel | 8.48e-10 | 68 |
epithelial tube open at both ends | 1.23e-09 | 59 |
blood vessel | 1.23e-09 | 59 |
blood vasculature | 1.23e-09 | 59 |
vascular cord | 1.23e-09 | 59 |
muscle tissue | 1.40e-09 | 64 |
musculature | 1.40e-09 | 64 |
musculature of body | 1.40e-09 | 64 |
somite | 1.63e-09 | 71 |
presomitic mesoderm | 1.63e-09 | 71 |
presumptive segmental plate | 1.63e-09 | 71 |
dermomyotome | 1.63e-09 | 71 |
trunk paraxial mesoderm | 1.63e-09 | 71 |
paraxial mesoderm | 3.25e-09 | 72 |
presumptive paraxial mesoderm | 3.25e-09 | 72 |
cardiovascular system | 6.10e-09 | 109 |
circulatory system | 6.44e-09 | 112 |
multilaminar epithelium | 1.15e-08 | 83 |
unilaminar epithelium | 1.21e-08 | 148 |
splanchnic layer of lateral plate mesoderm | 2.93e-08 | 83 |
epithelial tube | 5.21e-08 | 117 |
artery | 5.46e-08 | 42 |
arterial blood vessel | 5.46e-08 | 42 |
arterial system | 5.46e-08 | 42 |
mesenchyme | 6.71e-08 | 160 |
entire embryonic mesenchyme | 6.71e-08 | 160 |
trunk mesenchyme | 3.24e-07 | 122 |