FFCP PHASE1:Hg19::chr4:165675294..165675306,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100505989 | |EntrezGene=100505989 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=11bp_to_ENST00000507311,NR_038834,uc003iqu.1_5end | |association_with_transcript=11bp_to_ENST00000507311,NR_038834,uc003iqu.1_5end | ||
|cluster_id=chr4:165675294..165675306,+ | |||
|coexpression_cluster_id=C190 | |coexpression_cluster_id=C190 | ||
|description=CAGE_peak_3_at_LOC100505989_5end | |description=CAGE_peak_3_at_LOC100505989_5end | ||
|id=chr4:165675294..165675306,+ | |id=chr4:165675294..165675306,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.56e-15;1!UBERON:0006242;2.56e-15;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3493;1.44e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.50e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000160!3.98e-14!27;UBERON:0004921!3.77e-13!129;UBERON:0004185!3.77e-13!129;UBERON:0001007!1.08e-12!155;UBERON:0001555!1.08e-12!155;UBERON:0007026!1.08e-12!155;UBERON:0002294!5.52e-12!7;UBERON:0001173!5.52e-12!7;UBERON:0004912!5.52e-12!7;UBERON:0003127!7.13e-12!2;UBERON:0004119!3.12e-11!169;UBERON:0000925!3.12e-11!169;UBERON:0006595!3.12e-11!169;UBERON:0005409!1.24e-10!35;UBERON:0001155!4.95e-10!9;UBERON:0007023!2.44e-09!115;UBERON:0005178!1.26e-08!34;UBERON:0002224!1.26e-08!34;UBERON:0005181!2.40e-08!35;UBERON:0000059!3.26e-08!11;UBERON:0002110!8.48e-08!3;UBERON:0006242!8.48e-08!3;UBERON:0001154!9.67e-07!1;UBERON:0001153!9.67e-07!1 | |ontology_enrichment_uberon=UBERON:0000160!3.98e-14!27;UBERON:0004921!3.77e-13!129;UBERON:0004185!3.77e-13!129;UBERON:0001007!1.08e-12!155;UBERON:0001555!1.08e-12!155;UBERON:0007026!1.08e-12!155;UBERON:0002294!5.52e-12!7;UBERON:0001173!5.52e-12!7;UBERON:0004912!5.52e-12!7;UBERON:0003127!7.13e-12!2;UBERON:0004119!3.12e-11!169;UBERON:0000925!3.12e-11!169;UBERON:0006595!3.12e-11!169;UBERON:0005409!1.24e-10!35;UBERON:0001155!4.95e-10!9;UBERON:0007023!2.44e-09!115;UBERON:0005178!1.26e-08!34;UBERON:0002224!1.26e-08!34;UBERON:0005181!2.40e-08!35;UBERON:0000059!3.26e-08!11;UBERON:0002110!8.48e-08!3;UBERON:0006242!8.48e-08!3;UBERON:0001154!9.67e-07!1;UBERON:0001153!9.67e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.93e-38;17!UBERON:0005409;7.08e-30;22!UBERON:0003127;3.94e-29;2!UBERON:0002108;3.04e-26;4!UBERON:0001155;1.02e-25;9!UBERON:0000059;4.05e-21;11!UBERON:0004921;3.41e-18;33!UBERON:0001154;2.56e-15;1!UBERON:0001153;2.56e-15;1!UBERON:0009854;2.56e-15;1!UBERON:0003126;4.95e-09;7!UBERON:0001005;4.95e-09;7!UBERON:0001555;1.17e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.85e-38,17;UBERON:0003127,5.25e-29,2;UBERON:0005409,2.13e-26,25;UBERON:0002108,3.62e-26,4;UBERON:0001155,8.67e-26,9;UBERON:0000059,3.56e-21,11;UBERON:0001154,2.38e-15,1;UBERON:0001153,2.38e-15,1;UBERON:0001045,2.38e-15,1;UBERON:0004921,2.83e-13,118;UBERON:0001007,9.58e-13,145;UBERON:0001555,9.58e-13,145;UBERON:0007026,9.58e-13,145;UBERON:0004119,1.95e-11,160;UBERON:0000925,1.95e-11,160;UBERON:0006595,1.95e-11,160;UBERON:0003126,5.37e-09,7;UBERON:0001005,5.37e-09,7;UBERON:0011216,1.01e-07,223 | |||
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|short_description=p3@LOC100505989 | |short_description=p3@LOC100505989 | ||
}} | }} |
Latest revision as of 13:49, 16 September 2015
Short description: | p3@LOC100505989 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOC100505989_5end |
Coexpression cluster: | C190_colon_small_rectum_duodenum_appendix_temporal_oral |
Association with transcript: | 11bp_to_ENST00000507311, NR_038834, uc003iqu.1_5end |
EntrezGene: | LOC100505989 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 2.85e-38 | 17 |
open tracheal system trachea | 5.25e-29 | 2 |
gastrointestinal system | 2.13e-26 | 25 |
small intestine | 3.62e-26 | 4 |
colon | 8.67e-26 | 9 |
large intestine | 3.56e-21 | 11 |
vermiform appendix | 2.38e-15 | 1 |
caecum | 2.38e-15 | 1 |
midgut | 2.38e-15 | 1 |
subdivision of digestive tract | 2.83e-13 | 118 |
digestive system | 9.58e-13 | 145 |
digestive tract | 9.58e-13 | 145 |
primitive gut | 9.58e-13 | 145 |
endoderm-derived structure | 1.95e-11 | 160 |
endoderm | 1.95e-11 | 160 |
presumptive endoderm | 1.95e-11 | 160 |
trachea | 5.37e-09 | 7 |
respiratory airway | 5.37e-09 | 7 |
organ system subdivision | 1.01e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.50e-08 | 2 |