FFCP PHASE1:Hg19::chr9:139879342..139879362,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401562 | |EntrezGene=401562 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=34436 | |HGNC=34436 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=418bp_to_BC062468_5end | |association_with_transcript=418bp_to_BC062468_5end | ||
|cluster_id=chr9:139879342..139879362,+ | |||
|coexpression_cluster_id=C44 | |coexpression_cluster_id=C44 | ||
|description=CAGE_peak_6_at_LCNL1_5end | |description=CAGE_peak_6_at_LCNL1_5end | ||
|id=chr9:139879342..139879362,+ | |id=chr9:139879342..139879362,+ | ||
|ontology_enrichment_celltype=CL:0000625!2.51e-18!11;CL:0002322!7.71e-11!5;CL:0000791!2.14e-10!18;CL:0000789!2.14e-10!18;CL:0002420!2.14e-10!18;CL:0002419!2.14e-10!18;CL:0000790!2.14e-10!18;CL:0000784!3.24e-09!3;CL:0000084!6.09e-07!25;CL:0000827!6.09e-07!25 | |ontology_enrichment_celltype=CL:0000625!2.51e-18!11;CL:0002322!7.71e-11!5;CL:0000791!2.14e-10!18;CL:0000789!2.14e-10!18;CL:0002420!2.14e-10!18;CL:0002419!2.14e-10!18;CL:0000790!2.14e-10!18;CL:0000784!3.24e-09!3;CL:0000084!6.09e-07!25;CL:0000827!6.09e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000784;4.48e-44;3!CL:0000625;4.73e-32;11!CL:0000791;1.21e-19;18!CL:0000789;1.21e-19;18!CL:0002419;1.21e-19;18!CL:0000084;3.68e-14;25!CL:0000451;1.56e-12;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,4.49e-44,3;CL:0000625,3.77e-32,11;CL:0000791,1.06e-19,18;CL:0000789,1.06e-19,18;CL:0002420,1.06e-19,18;CL:0002419,1.06e-19,18;CL:0000790,1.06e-19,18;CL:0000084,3.34e-14,25;CL:0000827,3.34e-14,25;CL:0000451,1.56e-12,10;CL:0000738,1.48e-07,136;CL:0000838,8.27e-07,52 | |||
|ontology_enrichment_development_v019=CL:0000790;1.21e-19;18!UBERON:0006965;2.57e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.53e-34!115;UBERON:0001049!8.83e-31!57;UBERON:0005068!8.83e-31!57;UBERON:0006241!8.83e-31!57;UBERON:0007135!8.83e-31!57;UBERON:0002780!5.88e-26!41;UBERON:0001890!5.88e-26!41;UBERON:0006240!5.88e-26!41;UBERON:0003080!3.41e-25!42;UBERON:0002616!4.22e-25!59;UBERON:0005743!7.37e-25!86;UBERON:0001017!8.48e-25!82;UBERON:0001893!2.24e-24!34;UBERON:0002619!2.27e-23!22;UBERON:0002791!1.14e-22!33;UBERON:0001950!1.41e-22!20;UBERON:0002020!4.43e-22!34;UBERON:0003528!4.43e-22!34;UBERON:0003075!4.95e-22!86;UBERON:0007284!4.95e-22!86;UBERON:0000955!1.15e-21!69;UBERON:0006238!1.15e-21!69;UBERON:0000073!1.27e-21!94;UBERON:0001016!1.27e-21!94;UBERON:0001869!2.46e-21!32;UBERON:0002346!1.20e-20!90;UBERON:0000956!3.65e-20!25;UBERON:0000203!3.65e-20!25;UBERON:0003056!5.59e-17!61;UBERON:0000200!1.30e-14!6;UBERON:0000153!1.33e-13!129;UBERON:0007811!1.33e-13!129;UBERON:0000033!1.73e-12!123;UBERON:0002298!5.99e-10!8;UBERON:0004121!1.60e-09!169;UBERON:0000924!4.22e-09!173;UBERON:0006601!4.22e-09!173;UBERON:0002771!3.07e-08!3;UBERON:0001872!7.16e-08!5;UBERON:0001896!8.82e-08!3;UBERON:0005290!8.82e-08!3;UBERON:0010096!8.82e-08!3;UBERON:0001871!2.25e-07!7;UBERON:0003076!6.56e-07!15;UBERON:0003057!6.56e-07!15 | |ontology_enrichment_uberon=UBERON:0007023!1.53e-34!115;UBERON:0001049!8.83e-31!57;UBERON:0005068!8.83e-31!57;UBERON:0006241!8.83e-31!57;UBERON:0007135!8.83e-31!57;UBERON:0002780!5.88e-26!41;UBERON:0001890!5.88e-26!41;UBERON:0006240!5.88e-26!41;UBERON:0003080!3.41e-25!42;UBERON:0002616!4.22e-25!59;UBERON:0005743!7.37e-25!86;UBERON:0001017!8.48e-25!82;UBERON:0001893!2.24e-24!34;UBERON:0002619!2.27e-23!22;UBERON:0002791!1.14e-22!33;UBERON:0001950!1.41e-22!20;UBERON:0002020!4.43e-22!34;UBERON:0003528!4.43e-22!34;UBERON:0003075!4.95e-22!86;UBERON:0007284!4.95e-22!86;UBERON:0000955!1.15e-21!69;UBERON:0006238!1.15e-21!69;UBERON:0000073!1.27e-21!94;UBERON:0001016!1.27e-21!94;UBERON:0001869!2.46e-21!32;UBERON:0002346!1.20e-20!90;UBERON:0000956!3.65e-20!25;UBERON:0000203!3.65e-20!25;UBERON:0003056!5.59e-17!61;UBERON:0000200!1.30e-14!6;UBERON:0000153!1.33e-13!129;UBERON:0007811!1.33e-13!129;UBERON:0000033!1.73e-12!123;UBERON:0002298!5.99e-10!8;UBERON:0004121!1.60e-09!169;UBERON:0000924!4.22e-09!173;UBERON:0006601!4.22e-09!173;UBERON:0002771!3.07e-08!3;UBERON:0001872!7.16e-08!5;UBERON:0001896!8.82e-08!3;UBERON:0005290!8.82e-08!3;UBERON:0010096!8.82e-08!3;UBERON:0001871!2.25e-07!7;UBERON:0003076!6.56e-07!15;UBERON:0003057!6.56e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002771;2.57e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,2.67e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0.637130828648193,0.651083453856419,0,1.50575119077773,1.53583933385302,2.49861453104692,0,0.821127996921047,0.604820229674197,2.40696176205157,2.31719046212478,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,10.2550968451297,7.43593384014166,10.4008100372278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01767934783746,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646882724578552,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05553817648832,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0,0,0,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0.137539436597234,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.09823638411767,0.250381861413,0.573409195690071,0.332787154610557,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.478901577171454,0.615349092722265,0,0.553258019713743,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405225507710368,0.781078098613847,0.413373593002368,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.263091094251396,0,0,0.078493092850514,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.8453114551668,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0.829169439458779,0.103432995861895,0,0,0.968833647540092,0.869046000142011,0,0,0,0.217716747896961,0,0.0673520530145875,0,0,0,0,0,0,0,0.122241444182866,0,0,1.00636896795513,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0.637130828648193,0.651083453856419,0,1.50575119077773,1.53583933385302,2.49861453104692,0,0.821127996921047,0.604820229674197,2.40696176205157,2.31719046212478,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,10.2550968451297,7.43593384014166,10.4008100372278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01767934783746,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646882724578552,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05553817648832,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0,0,0,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0.137539436597234,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.09823638411767,0.250381861413,0.573409195690071,0.332787154610557,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.478901577171454,0.615349092722265,0,0.553258019713743,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405225507710368,0.781078098613847,0.413373593002368,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.263091094251396,0,0,0.078493092850514,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.8453114551668,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0.829169439458779,0.103432995861895,0,0,0.968833647540092,0.869046000142011,0,0,0,0.217716747896961,0,0.0673520530145875,0,0,0,0,0,0,0,0.122241444182866,0,0,1.00636896795513,0 | ||
|short_description=p6@LCNL1 | |short_description=p6@LCNL1 | ||
}} | }} |
Latest revision as of 14:49, 16 September 2015
Short description: | p6@LCNL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LCNL1_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 418bp_to_BC062468_5end |
EntrezGene: | LCNL1 |
HGNC: | 34436 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 4.49e-44 | 3 |
CD8-positive, alpha-beta T cell | 3.77e-32 | 11 |
mature alpha-beta T cell | 1.06e-19 | 18 |
alpha-beta T cell | 1.06e-19 | 18 |
immature T cell | 1.06e-19 | 18 |
mature T cell | 1.06e-19 | 18 |
immature alpha-beta T cell | 1.06e-19 | 18 |
T cell | 3.34e-14 | 25 |
pro-T cell | 3.34e-14 | 25 |
dendritic cell | 1.56e-12 | 10 |
leukocyte | 1.48e-07 | 136 |
lymphoid lineage restricted progenitor cell | 8.27e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 2.67e-08 | 2 |