FFCP PHASE1:Hg19::chr16:449412..449439,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:449412..449439,+
|short_description=p7@NME4
|description=CAGE_peak_7_at_NME4_5end
|association_with_transcript=0bp_to_AF086133_5end
|EntrezGene=4833
|HG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4833 | |EntrezGene=4833 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7852 | |HGNC=7852 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AF086133_5end | |||
|cluster_id=chr16:449412..449439,+ | |||
|description=CAGE_peak_7_at_NME4_5end | |||
|id=chr16:449412..449439,+ | |||
|ontology_enrichment_celltype=CL:0002321!4.05e-16!248;CL:0000220!8.24e-16!246;CL:0000055!1.08e-14!180;CL:0000222!1.00e-10!119;CL:0000183!3.09e-10!59;CL:0000393!3.83e-10!60;CL:0000211!3.83e-10!60;CL:0000144!3.05e-09!625;CL:0000680!4.19e-09!57;CL:0000056!4.19e-09!57;CL:0000355!4.19e-09!57;CL:0000187!4.87e-09!54;CL:0000192!5.70e-09!42;CL:0000514!5.70e-09!42;CL:0000548!1.40e-08!679;CL:0000004!1.40e-08!679;CL:0000255!1.40e-08!679;CL:0002371!2.07e-08!591;CL:0000012!2.75e-08!682;CL:0000359!3.28e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.57e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.32e-08,250;CL:0000393,4.71e-08,61;CL:0000211,4.71e-08,61;CL:0000680,6.91e-08,58;CL:0000056,6.91e-08,58;CL:0000355,6.91e-08,58;CL:0000359,1.24e-07,32;CL:0000192,1.51e-07,43;CL:0000514,1.51e-07,43;CL:0000187,1.97e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!5.29e-10!82;UBERON:0005256!6.01e-10!143;UBERON:0004290!2.21e-09!70;UBERON:0000914!7.86e-09!83;UBERON:0002329!7.86e-09!83;UBERON:0003077!7.86e-09!83;UBERON:0003059!7.86e-09!83;UBERON:0007282!7.86e-09!83;UBERON:0009618!7.86e-09!83;UBERON:0007285!7.86e-09!83;UBERON:0002100!4.76e-08!216;UBERON:0002385!3.32e-07!63;UBERON:0001015!3.32e-07!63;UBERON:0000383!3.32e-07!63;UBERON:0001134!3.80e-07!61;UBERON:0002036!3.80e-07!61;UBERON:0003082!3.80e-07!61;UBERON:0003914!3.87e-07!118;UBERON:0002049!4.25e-07!79;UBERON:0007798!4.25e-07!79;UBERON:0000490!4.48e-07!138;UBERON:0001981!8.85e-07!60;UBERON:0007500!8.85e-07!60;UBERON:0004537!8.85e-07!60;UBERON:0006965!8.85e-07!60 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.84e-11,78;UBERON:0005256,5.22e-11,122;UBERON:0002329,1.93e-09,71;UBERON:0003059,1.93e-09,71;UBERON:0007282,1.93e-09,71;UBERON:0004290,1.93e-09,71;UBERON:0009618,1.93e-09,71;UBERON:0000486,2.84e-09,83;UBERON:0003077,4.04e-09,72;UBERON:0007285,4.04e-09,72;UBERON:0007524,8.24e-09,73;UBERON:0003104,3.90e-08,160;UBERON:0009142,3.90e-08,160;UBERON:0000490,8.24e-08,148;UBERON:0002100,2.21e-07,199;UBERON:0002385,6.98e-07,64;UBERON:0001015,6.98e-07,64;UBERON:0000383,6.98e-07,64 | |||
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|short_description=p7@NME4 | |||
}} | }} |
Latest revision as of 16:37, 16 September 2015
Short description: | p7@NME4 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_NME4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AF086133_5end |
EntrezGene: | NME4 |
HGNC: | 7852 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.32e-08 | 250 |
electrically responsive cell | 4.71e-08 | 61 |
electrically active cell | 4.71e-08 | 61 |
muscle precursor cell | 6.91e-08 | 58 |
myoblast | 6.91e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.91e-08 | 58 |
vascular associated smooth muscle cell | 1.24e-07 | 32 |
smooth muscle cell | 1.51e-07 | 43 |
smooth muscle myoblast | 1.51e-07 | 43 |
muscle cell | 1.97e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.84e-11 | 78 |
trunk mesenchyme | 5.22e-11 | 122 |
somite | 1.93e-09 | 71 |
presomitic mesoderm | 1.93e-09 | 71 |
presumptive segmental plate | 1.93e-09 | 71 |
dermomyotome | 1.93e-09 | 71 |
trunk paraxial mesoderm | 1.93e-09 | 71 |
multilaminar epithelium | 2.84e-09 | 83 |
paraxial mesoderm | 4.04e-09 | 72 |
presumptive paraxial mesoderm | 4.04e-09 | 72 |
dense mesenchyme tissue | 8.24e-09 | 73 |
mesenchyme | 3.90e-08 | 160 |
entire embryonic mesenchyme | 3.90e-08 | 160 |
unilaminar epithelium | 8.24e-08 | 148 |
trunk | 2.21e-07 | 199 |
muscle tissue | 6.98e-07 | 64 |
musculature | 6.98e-07 | 64 |
musculature of body | 6.98e-07 | 64 |