FFCP PHASE1:Hg19::chr13:30683014..30683037,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42687 | |HGNC=42687 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000432770_5end | |association_with_transcript=-2bp_to_ENST00000432770_5end | ||
|cluster_id=chr13:30683014..30683037,- | |||
|description=CAGE_peak_1_at_LINC00365_5end | |description=CAGE_peak_1_at_LINC00365_5end | ||
|id=chr13:30683014..30683037,- | |id=chr13:30683014..30683037,- | ||
|ontology_enrichment_celltype=CL:0002076!3.04e-21!43;CL:0000223!9.91e-19!59;CL:0000066!1.66e-18!254;CL:0002368!5.31e-11!13;CL:0002231!9.06e-08!3;CL:0002251!1.11e-07!21 | |ontology_enrichment_celltype=CL:0002076!3.04e-21!43;CL:0000223!9.91e-19!59;CL:0000066!1.66e-18!254;CL:0002368!5.31e-11!13;CL:0002231!9.06e-08!3;CL:0002251!1.11e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002368;4.03e-13;13!CL:0002076;4.97e-12;42!CL:0002178;1.41e-10;3!CL:1001319;4.25e-08;1!CL:1000600;4.25e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,4.77e-15,58;CL:0002076,6.14e-15,42;CL:0002368,3.08e-13,13;CL:0002178,1.34e-10,3;CL:0000066,3.23e-10,253;CL:1001319,4.41e-08,1;CL:1000600,4.41e-08,1 | |||
|ontology_enrichment_development_v019=CL:0000223;3.16e-11;58 | |||
|ontology_enrichment_disease=DOID:305!3.67e-19!106;DOID:1749!4.35e-15!14;DOID:0050687!1.43e-13!143;DOID:299!5.06e-09!25;DOID:3119!6.15e-08!14;DOID:162!9.01e-07!235 | |ontology_enrichment_disease=DOID:305!3.67e-19!106;DOID:1749!4.35e-15!14;DOID:0050687!1.43e-13!143;DOID:299!5.06e-09!25;DOID:3119!6.15e-08!14;DOID:162!9.01e-07!235 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.58e-12;14!DOID:3151;4.25e-08;1!DOID:3149;4.25e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.09e-12,14;DOID:305,1.15e-08,106;DOID:3151,7.16e-08,1;DOID:3149,7.16e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.30e-21!169;UBERON:0000925!6.30e-21!169;UBERON:0006595!6.30e-21!169;UBERON:0001007!1.10e-14!155;UBERON:0001555!1.10e-14!155;UBERON:0007026!1.10e-14!155;UBERON:0000077!3.49e-14!130;UBERON:0004921!3.14e-13!129;UBERON:0004185!3.14e-13!129;UBERON:0002294!8.07e-12!7;UBERON:0001173!8.07e-12!7;UBERON:0004912!8.07e-12!7;UBERON:0005911!1.74e-11!82;UBERON:0005153!2.61e-09!37;UBERON:0000344!7.84e-09!12;UBERON:0003124!3.85e-08!7;UBERON:0000065!6.40e-08!53;UBERON:0002110!9.06e-08!3;UBERON:0006242!9.06e-08!3;UBERON:0003729!1.88e-07!5;UBERON:0001004!2.96e-07!72;UBERON:0005409!3.18e-07!35;UBERON:0001041!3.80e-07!98;UBERON:0005157!7.19e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0000945;1.65e-13;5!UBERON:0010039;1.65e-13;5!UBERON:0004645;4.25e-08;1!UBERON:0001256;4.25e-08;1!UBERON:0001259;4.25e-08;1!UBERON:0005409;1.51e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.74e-12,160;UBERON:0000925,7.74e-12,160;UBERON:0006595,7.74e-12,160;UBERON:0004921,3.27e-10,118;UBERON:0000945,1.13e-08,8;UBERON:0010039,1.13e-08,8;UBERON:0004645,4.41e-08,1;UBERON:0001256,4.41e-08,1;UBERON:0001259,4.41e-08,1;UBERON:0001007,8.54e-08,145;UBERON:0001555,8.54e-08,145;UBERON:0007026,8.54e-08,145;UBERON:0001041,8.60e-08,87;UBERON:0000065,4.22e-07,54 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,0,1.18157981336281,0,3.32068784066407,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,1.20859449591622,0.200506470303285,0.644566922551274,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75169719801128,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81813406897076,2.30628080838127,0.255225424989168,1.71968227454435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,2.17781969722645,0.753150406214233,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0.890894042497916,0,0,0,0,0,0.422250816255987,0,0,1.76352923497993,0,0,0,0.0898683511473268,3.40140231883657,0,0,0,0,0,0,0,0.260427761085233,0.61221999997337,0,1.2517279311405,0,0,0,0,0,0,0,0,0,0,0,0,4.3221360726367,0,0,0,0,0.217294743844016,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0.424059214301822,0,0,1.32686346755009,0,0,0,0,0,0,0,0,0.19566461893209,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0.977756913674015,0.240476460754601,0.640358984218058,0,2.4495370916198,0,0,0,0,2.35694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,1.0063040627978,0,0,0,0,1.53532157855556,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.747511887973863,0.628817220398664,0.414239055347196,0,0,0,2.55336503108073,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.235939446695481,0,2.07946199070609,0,0,0,0,0,0.781514011233092,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,3.53340841014875,0.243835849964539,0,0,0,0,0,0.795803100645473,0,1.92008339466232,0,0.754814217833368,0.463044948647668,0,3.76253837089218,0,0.471353094203252,0,0,0,0,0,0,0,1.42843150884526,0,0,2.92134555298607,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0.426467963801962,0,0,0,0,0,0,0,0,0,0.430333232356058,0,1.46525883499754,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@LINC00365 | |short_description=p1@LINC00365 | ||
}} | }} |
Latest revision as of 01:46, 17 September 2015
Short description: | p1@LINC00365 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00365_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_ENST00000432770_5end |
EntrezGene: | NA |
HGNC: | 42687 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 4.77e-15 | 58 |
endo-epithelial cell | 6.14e-15 | 42 |
respiratory epithelial cell | 3.08e-13 | 13 |
epithelial cell of stomach | 1.34e-10 | 3 |
epithelial cell | 3.23e-10 | 253 |
bladder cell | 4.41e-08 | 1 |
lower urinary tract cell | 4.41e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.74e-12 | 160 |
endoderm | 7.74e-12 | 160 |
presumptive endoderm | 7.74e-12 | 160 |
subdivision of digestive tract | 3.27e-10 | 118 |
stomach | 1.13e-08 | 8 |
food storage organ | 1.13e-08 | 8 |
urinary bladder urothelium | 4.41e-08 | 1 |
wall of urinary bladder | 4.41e-08 | 1 |
mucosa of urinary bladder | 4.41e-08 | 1 |
digestive system | 8.54e-08 | 145 |
digestive tract | 8.54e-08 | 145 |
primitive gut | 8.54e-08 | 145 |
foregut | 8.60e-08 | 87 |
respiratory tract | 4.22e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.09e-12 | 14 |
carcinoma | 1.15e-08 | 106 |
skin squamous cell carcinoma | 7.16e-08 | 1 |
keratoacanthoma | 7.16e-08 | 1 |